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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15861-RA through 18771 annotations produced 1 hits



(CG15861):

Annotation Number : CG15861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035084
Gbrowse : chr2R:20830913-20832120 (-) // 100.0 //
Probeset : 1623388_at
Accessions : protein= NP_611984;, nucleotide= NM_138140;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035084.
BDGP gene expression has embryonic in situ data for CG15861: 8 pix of staining in 2 body parts.
BioGrid reports that CG15861 interacts with CG31160 .
VDRC has 2 RNAi stocks for FBgn0035084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 0.40Down
Head7 ± 10 of 4 0.40Down
Eye20 ± 14 of 4 1.02None
Thoracicoabdominal ganglion11 ± 12 of 4 0.60Down
Salivary gland28 ± 52 of 4 1.43None
Crop14 ± 13 of 4 0.70None
Midgut14 ± 12 of 4 0.70None
Tubule20 ± 03 of 4 1.00None
Hindgut15 ± 13 of 4 0.80None
Heart16 ± 14 of 4 0.85None
Fat body12 ± 41 of 4 0.62Down
Ovary27 ± 24 of 4 1.40Up
Testis7 ± 00 of 4 0.40Down
Male accessory glands17 ± 11 of 4 0.90None
Virgin spermatheca12 ± 10 of 4 0.64Down
Mated spermatheca12 ± 10 of 4 0.61Down
Adult carcass16 ± 30 of 4 0.90None
Larval CNS15 ± 24 of 4 0.76None
Larval Salivary gland24 ± 24 of 4 1.26None
Larval midgut18 ± 11 of 4 0.94None
Larval tubule12 ± 11 of 4 0.60Down
Larval hindgut65 ± 154 of 4 3.31None
Larval fat body16 ± 12 of 4 0.80None
Larval trachea51 ± 114 of 4 2.61Up
Larval carcass17 ± 20 of 4 0.86None
S2 cells (growing)52 ± 24 of 4 2.67Up
Whole fly19 ± 14 of 4

Looking for CG15861-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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