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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15862-RA through 18771 annotations produced 1 hits



cAMP-dependent protein kinase type II (Pka-R2):

Annotation Number : CG15862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022382
Gbrowse : chr2R:5883308-5913540 (-) // 100.0 //
Probeset : 1625594_s_at
Accessions : protein= NP_001097251; /// NP_001097252; /// NP_523671; /// NP_724860; /// NP_788297;, nucleotide= NM_001103781; /// NM_001103782; /// NM_078947; /// NM_165723; /// NM_176117;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004691 // cAMP-dependent protein kinase activi
FlyMine data for FBgn0022382.
Homophila reports that CG15862 is a close match (6e-63) to human gene CAR;CNC1;PPNAD1;PRKAR1A;TSE1 (NP_997637), a gene associated with Adrenocortical tumor, somatic (3);Carney complex, type 1, 160980 (3);Myxoma, intracardiac, 255960 (3);Pigmented adrenocortical disease, primary, 1, 610489 (3);Thyroid carcinoma, papillary, 188550 (3).
BioGrid reports that CG15862 interacts with CG3011 CG4079 CG1871 CG31999 CG3938 CG13388 CG13388 .
TRiP has 2 RNAi stocks for FBgn0022382 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain354 ± 144 of 4 2.20Up
Head84 ± 194 of 4 0.50Down
Eye29 ± 24 of 4 0.18Down
Thoracicoabdominal ganglion96 ± 174 of 4 0.60Down
Salivary gland234 ± 454 of 4 1.43None
Crop414 ± 274 of 4 2.50Up
Midgut130 ± 54 of 4 0.80Down
Tubule174 ± 134 of 4 1.10None
Hindgut142 ± 54 of 4 0.90Down
Heart71 ± 84 of 4 0.44Down
Fat body55 ± 144 of 4 0.34Down
Ovary359 ± 84 of 4 2.20Up
Testis10 ± 04 of 4 0.10Down
Male accessory glands64 ± 104 of 4 0.40Down
Virgin spermatheca23 ± 14 of 4 0.14Down
Mated spermatheca25 ± 14 of 4 0.16Down
Adult carcass53 ± 34 of 4 0.30Down
Larval CNS94 ± 94 of 4 0.58Down
Larval Salivary gland90 ± 174 of 4 0.55Down
Larval midgut113 ± 54 of 4 0.69Down
Larval tubule218 ± 114 of 4 1.30Up
Larval hindgut152 ± 104 of 4 0.93None
Larval fat body41 ± 54 of 4 0.30Down
Larval trachea151 ± 274 of 4 0.92None
Larval carcass192 ± 174 of 4 1.17None
S2 cells (growing)16 ± 14 of 4 0.10Down
Whole fly164 ± 64 of 4

Looking for CG15862-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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