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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15874-RA through 18771 annotations produced 1 hits



(CG15874):

Annotation Number : CG15874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035004
Gbrowse : chr2R:20319376-20320219 (-) // 100.0 //
Probeset : 1626343_at
Accessions : protein= NP_611911;, nucleotide= NM_138067;
FlyMine data for FBgn0035004.
VDRC has 1 RNAi stocks for FBgn0035004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head0 00 of 4 0.10Down
Eye2 10 of 4 0.27None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland2 00 of 4 0.28None
Crop3 10 of 4 0.40None
Midgut6 20 of 4 0.80None
Tubule2 00 of 4 0.30Down
Hindgut6 20 of 4 0.80None
Heart3 10 of 4 0.44None
Fat body1 00 of 4 0.20Down
Ovary2 10 of 4 0.30None
Testis44 34 of 4 5.40Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.18Down
Mated spermatheca1 00 of 4 0.15Down
Adult carcass10 40 of 4 1.20None
Larval CNS2 10 of 4 0.25None
Larval Salivary gland2 00 of 4 0.27None
Larval midgut5 20 of 4 0.72None
Larval tubule2 00 of 4 0.30None
Larval hindgut1 00 of 4 0.19None
Larval fat body10 30 of 4 1.20None
Larval trachea1 10 of 4 0.16Down
Larval carcass4 10 of 4 0.53None
S2 cells (growing)1 00 of 4 0.14Down
Whole fly8 20 of 4

Looking for CG15874-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime