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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15878-RA through 18771 annotations produced 1 hits


Annotation Number : CG15878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035316
Gbrowse : chr3L:2210872-2212503 (-) // 100.0 //
Probeset : 1640649_at
Accessions : protein= NP_647699;, nucleotide= NM_139442;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035316.
BDGP gene expression has embryonic in situ data for CG15878: 4 pix of staining in 1 body parts.
BioGrid reports that CG15878 interacts with CG7191 .
VDRC has 3 RNAi stocks for FBgn0035316 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head6 00 of 4 0.20Down
Eye2 00 of 4 0.07Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland3 20 of 4 0.13Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart0 00 of 4 0.03Down
Fat body6 30 of 4 0.20Down
Ovary1 00 of 4 0.00Down
Testis486 454 of 415.90Up
Male accessory glands6 10 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.10Down
Mated spermatheca4 10 of 4 0.15Down
Adult carcass11 10 of 4 0.40Down
Larval CNS1 00 of 4 0.03Down
Larval Salivary gland4 20 of 4 0.16Down
Larval midgut2 00 of 4 0.08Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.02Down
Larval fat body40 193 of 4 1.30None
Larval trachea1 20 of 4 0.06Down
Larval carcass6 00 of 4 0.20Down
S2 cells (growing)2 10 of 4 0.09Down
Whole fly30 44 of 4

Looking for CG15878-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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