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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15884-RA through 18771 annotations produced 1 hits



CG15884 (Cpr97Eb):

Annotation Number : CG15884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039481
Gbrowse : chr3R:22915416-22916845 (-) // 100.0 //
Probeset : 1639351_at
Accessions : protein= NP_651530;, nucleotide= NM_143273;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0039481.
BDGP gene expression has embryonic in situ data for CG15884: 6 pix of staining in 3 body parts.
BioGrid reports that CG15884 interacts with CG5674 CG8965 CG9184 CG17271 CG3052 CG3217 CG5846 CG7659 CG9036 CG9083 CG9704 CG9914 .
VDRC has 1 RNAi stocks for FBgn0039481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head42 ± 44 of 4 2.10Up
Eye38 ± 34 of 4 1.93Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland2 ± 10 of 4 0.14Down
Crop4 ± 00 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 11 of 4 0.10Down
Heart27 ± 133 of 4 1.36None
Fat body4 ± 10 of 4 0.22Down
Ovary3 ± 02 of 4 0.20Down
Testis38 ± 34 of 4 1.90Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca2 ± 10 of 4 0.14Down
Adult carcass100 ± 84 of 4 5.00Up
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland4 ± 11 of 4 0.23Down
Larval midgut0 ± 00 of 4 0.04Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.04Down
Larval fat body4 ± 10 of 4 0.20Down
Larval trachea1583 ± 5194 of 478.69Up
Larval carcass11 ± 13 of 4 0.56Down
S2 cells (growing)17 ± 04 of 4 0.86None
Whole fly20 ± 24 of 4

Looking for CG15884-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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