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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15894-RA through 18771 annotations produced 1 hits



(CG15894):

Annotation Number : CG15894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029864
Gbrowse : chrX:6214521-6221886 (+) // 100.0 //
Probeset : 1623592_at
Accessions : protein= NP_001096891; /// NP_572314;, nucleotide= NM_001103421; /// NM_132086;
FlyMine data for FBgn0029864.
VDRC has 6 RNAi stocks for FBgn0029864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 24 of 4 7.50Up
Head5 ± 10 of 4 1.40None
Eye2 ± 10 of 4 0.65None
Thoracicoabdominal ganglion11 ± 22 of 4 3.10Up
Salivary gland4 ± 20 of 4 1.34None
Crop3 ± 10 of 4 0.90None
Midgut1 ± 00 of 4 0.40None
Tubule3 ± 00 of 4 1.00None
Hindgut1 ± 00 of 4 0.40None
Heart4 ± 10 of 4 1.29None
Fat body2 ± 20 of 4 0.79None
Ovary0 ± 00 of 4 0.20None
Testis3 ± 11 of 4 1.10None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca2 ± 00 of 4 0.53None
Mated spermatheca2 ± 10 of 4 0.55None
Adult carcass4 ± 20 of 4 1.10None
Larval CNS6 ± 13 of 4 1.68None
Larval Salivary gland3 ± 10 of 4 0.99None
Larval midgut2 ± 00 of 4 0.68None
Larval tubule3 ± 11 of 4 0.90None
Larval hindgut2 ± 00 of 4 0.57None
Larval fat body6 ± 10 of 4 1.90None
Larval trachea4 ± 30 of 4 1.10None
Larval carcass1 ± 00 of 4 0.32None
S2 cells (growing)0 ± 00 of 4 0.27None
Whole fly3 ± 10 of 4

Looking for CG15894-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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