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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15909-RA through 18771 annotations produced 1 hits


Annotation Number : CG15909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033090
Gbrowse : chr2R:2570743-2571862 (+) // 100.0 //
Probeset : 1639698_at
Accessions : protein= NP_610225;, nucleotide= NM_136381;
FlyMine data for FBgn0033090.
VDRC has 2 RNAi stocks for FBgn0033090 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head3 10 of 4 0.40None
Eye0 00 of 4 0.09Down
Thoracicoabdominal ganglion3 20 of 4 0.40None
Salivary gland9 70 of 4 0.98None
Crop3 00 of 4 0.30Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.30Down
Hindgut9 00 of 4 1.00None
Heart1 00 of 4 0.12Down
Fat body0 00 of 4 0.07Down
Ovary1 00 of 4 0.10Down
Testis138 74 of 413.90Up
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.12Down
Mated spermatheca1 00 of 4 0.18Down
Adult carcass4 10 of 4 0.40None
Larval CNS0 00 of 4 0.08Down
Larval Salivary gland2 00 of 4 0.24Down
Larval midgut0 00 of 4 0.08Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut3 10 of 4 0.38Down
Larval fat body20 72 of 4 2.00None
Larval trachea1 10 of 4 0.17Down
Larval carcass1 00 of 4 0.13Down
S2 cells (growing)15 03 of 4 1.52None
Whole fly9 12 of 4

Looking for CG15909-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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