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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15916-RA through 18771 annotations produced 1 hits



(CG15916):

Annotation Number : CG15916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030704
Gbrowse : chrX:15784631-15785583 (+) // 100.0 //
Probeset : 1629623_at
Accessions : protein= NP_573088;, nucleotide= NM_132860;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030704.
BDGP gene expression has embryonic in situ data for CG15916: 8 pix of staining in 1 body parts.
BioGrid reports that CG15916 interacts with CG6510 .
VDRC has 2 RNAi stocks for FBgn0030704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 24 of 4 1.40Up
Head124 ± 74 of 4 0.90None
Eye140 ± 54 of 4 1.05None
Thoracicoabdominal ganglion154 ± 34 of 4 1.20None
Salivary gland139 ± 64 of 4 1.04None
Crop134 ± 34 of 4 1.00None
Midgut126 ± 34 of 4 0.90None
Tubule91 ± 24 of 4 0.70Down
Hindgut131 ± 34 of 4 1.00None
Heart117 ± 54 of 4 0.88None
Fat body95 ± 114 of 4 0.72Down
Ovary256 ± 54 of 4 1.90Up
Testis40 ± 34 of 4 0.30Down
Male accessory glands112 ± 34 of 4 0.80None
Virgin spermatheca72 ± 54 of 4 0.54Down
Mated spermatheca65 ± 24 of 4 0.49Down
Adult carcass124 ± 54 of 4 0.90None
Larval CNS72 ± 84 of 4 0.54Down
Larval Salivary gland93 ± 54 of 4 0.70Down
Larval midgut90 ± 24 of 4 0.68Down
Larval tubule134 ± 24 of 4 1.00None
Larval hindgut77 ± 04 of 4 0.58Down
Larval fat body67 ± 34 of 4 0.50Down
Larval trachea74 ± 54 of 4 0.55Down
Larval carcass82 ± 14 of 4 0.61Down
S2 cells (growing)101 ± 14 of 4 0.76Down
Whole fly134 ± 74 of 4

Looking for CG15916-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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