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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15917-RA through 18771 annotations produced 1 hits



(CG15917):

Annotation Number : CG15917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034199
Gbrowse : chr2R:13024002-13024359 (+) // 100.0 //
Probeset : 1641623_at
Accessions : protein= NP_611194;, nucleotide= NM_137350;
FlyMine data for FBgn0034199.
VDRC has 2 RNAi stocks for FBgn0034199 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 04 of 4 0.20Down
Head615 ± 194 of 4 5.40Up
Eye588 ± 254 of 4 5.16Up
Thoracicoabdominal ganglion24 ± 14 of 4 0.20Down
Salivary gland570 ± 384 of 4 5.01Up
Crop116 ± 94 of 4 1.00None
Midgut18 ± 11 of 4 0.20Down
Tubule44 ± 24 of 4 0.40Down
Hindgut75 ± 34 of 4 0.70Down
Heart527 ± 204 of 4 4.63Up
Fat body779 ± 1104 of 4 6.84Up
Ovary5 ± 11 of 4 0.10Down
Testis29 ± 24 of 4 0.30Down
Male accessory glands326 ± 134 of 4 2.90Up
Virgin spermatheca490 ± 84 of 4 4.30Up
Mated spermatheca368 ± 244 of 4 3.23Up
Adult carcass371 ± 204 of 4 3.30Up
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland8 ± 30 of 4 0.07Down
Larval midgut2 ± 00 of 4 0.02Down
Larval tubule79 ± 74 of 4 0.70Down
Larval hindgut35 ± 24 of 4 0.31Down
Larval fat body1272 ± 1764 of 411.20Up
Larval trachea68 ± 284 of 4 0.60Down
Larval carcass19 ± 21 of 4 0.17Down
S2 cells (growing)210 ± 114 of 4 1.84Up
Whole fly114 ± 84 of 4

Looking for CG15917-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime