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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15929-RA through 18771 annotations produced 1 hits



lin-52 (lin-52):

Annotation Number : CG15929
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029800
Gbrowse : chrX:5648234-5648917 (-) // 100.0 //
Probeset : 1628798_at
Accessions : protein= NP_572256;, nucleotide= NM_132028;
Pathway : 0031523 // Myb complex // inferred from direct assay
FlyMine data for FBgn0029800.
TRiP has 1 RNAi stocks for FBgn0029800 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 14 of 4 1.40Up
Head50 24 of 4 0.50Down
Eye86 64 of 4 0.91None
Thoracicoabdominal ganglion120 34 of 4 1.30Up
Salivary gland94 24 of 4 0.99None
Crop69 44 of 4 0.70Down
Midgut37 14 of 4 0.40Down
Tubule32 14 of 4 0.30Down
Hindgut57 14 of 4 0.60Down
Heart29 34 of 4 0.31Down
Fat body31 74 of 4 0.33Down
Ovary258 34 of 4 2.70Up
Testis24 24 of 4 0.30Down
Male accessory glands58 44 of 4 0.60Down
Virgin spermatheca20 24 of 4 0.21Down
Mated spermatheca21 04 of 4 0.22Down
Adult carcass42 34 of 4 0.50Down
Larval CNS141 34 of 4 1.48Up
Larval Salivary gland52 24 of 4 0.55Down
Larval midgut21 44 of 4 0.23Down
Larval tubule31 24 of 4 0.30Down
Larval hindgut32 34 of 4 0.35Down
Larval fat body34 24 of 4 0.40Down
Larval trachea68 44 of 4 0.72Down
Larval carcass51 44 of 4 0.54Down
S2 cells (growing)71 24 of 4 0.75Down
Whole fly95 34 of 4

Looking for CG15929-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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