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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1597-RA through 18771 annotations produced 1 hits



(CG1597):

Annotation Number : CG1597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030289
Gbrowse : chrX:11238538-11242033 (-) // 100.0 //
Probeset : 1627013_at
Accessions : protein= NP_572707;, nucleotide= NM_132479;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004573 // mannosyl-oligosaccharide glucosidas
FlyMine data for FBgn0030289.
Homophila reports that CG1597 is a close match (3e-141) to human gene GCS1 (NP_006293), a gene associated with Glucosidase I deficiency, 606056 (3).
VDRC has 2 RNAi stocks for FBgn0030289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 54 of 4 1.50Up
Head98 94 of 4 1.00None
Eye114 74 of 4 1.17None
Thoracicoabdominal ganglion208 104 of 4 2.10Up
Salivary gland88 74 of 4 0.90None
Crop114 54 of 4 1.20Up
Midgut96 74 of 4 1.00None
Tubule113 24 of 4 1.20Up
Hindgut103 14 of 4 1.10None
Heart120 64 of 4 1.23Up
Fat body133 114 of 4 1.36Up
Ovary230 44 of 4 2.40Up
Testis18 04 of 4 0.20Down
Male accessory glands71 24 of 4 0.70Down
Virgin spermatheca249 94 of 4 2.54Up
Mated spermatheca230 104 of 4 2.34Up
Adult carcass89 24 of 4 0.90None
Larval CNS203 64 of 4 2.07Up
Larval Salivary gland85 64 of 4 0.87None
Larval midgut90 24 of 4 0.92None
Larval tubule186 124 of 4 1.90Up
Larval hindgut99 14 of 4 1.02None
Larval fat body128 104 of 4 1.30None
Larval trachea105 214 of 4 1.07None
Larval carcass89 44 of 4 0.91None
S2 cells (growing)159 64 of 4 1.62Up
Whole fly98 34 of 4

Looking for CG1597-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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