FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1609-RA through 18771 annotations produced 1 hits

Gcn2 (Gcn2):

Annotation Number : CG1609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019990
Gbrowse : chr3R:27221379-27227735 (+) // 100.0 //
Probeset : 1632728_at
Accessions : protein= NP_477230;, nucleotide= NM_057882;
Pathway : via spliceosome // inferred by curator /// 0006417 // regulation of translation // inferred by curator /// 0006468 // p
Interpro : 0005829 // cytosol // inferred by curator /// 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071
FlyMine data for FBgn0019990.
Homophila reports that CG1609 is a close match (2e-12) to human gene BRAF (NP_004324), a gene associated with Adenocarcinoma of lung, somatic, 211980 (3);Cardiofaciocutaneous syndrome, 115150 (3);Colorectal cancer, somatic (3);Melanoma, melignant, somatic (3);Nonsmall cell lung cancer, somatic (3).
TRiP has 1 RNAi stocks for FBgn0019990 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019990 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	95 ± 3	4 of 4	0.90	None
Head	77 ± 9	4 of 4	0.80	None
Eye	48 ± 3	4 of 4	0.49	Down
Thoracicoabdominal ganglion	109 ± 8	4 of 4	1.10	None
Salivary gland	50 ± 6	4 of 4	0.50	Down
Crop	169 ± 9	4 of 4	1.70	Up
Midgut	79 ± 3	4 of 4	0.80	Down
Tubule	156 ± 3	4 of 4	1.60	Up
Hindgut	98 ± 5	4 of 4	1.00	None
Heart	79 ± 3	4 of 4	0.79	Down
Fat body	109 ± 20	4 of 4	1.09	None
Ovary	236 ± 1	4 of 4	2.30	Up
Testis	52 ± 2	4 of 4	0.50	Down
Male accessory glands	69 ± 5	4 of 4	0.70	Down
Virgin spermatheca	146 ± 16	4 of 4	1.45	None
Mated spermatheca	130 ± 5	4 of 4	1.29	Up
Adult carcass	63 ± 6	4 of 4	0.60	Down
Larval CNS	290 ± 32	4 of 4	2.89	Up
Larval Salivary gland	67 ± 3	4 of 4	0.67	Down
Larval midgut	58 ± 5	4 of 4	0.58	Down
Larval tubule	110 ± 6	4 of 4	1.10	None
Larval hindgut	122 ± 6	4 of 4	1.22	Up
Larval fat body	67 ± 2	4 of 4	0.70	Down
Larval trachea	110 ± 9	4 of 4	1.10	None
Larval carcass	121 ± 4	4 of 4	1.21	Up
S2 cells (growing)	152 ± 4	4 of 4	1.51	Up
Whole fly	100 ± 4	4 of 4

Looking for CG1609-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720