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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1615-RB through 18771 annotations produced 1 hits



Open rectifier K[+] channel 1 (Ork1):

Annotation Number : CG1615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017561
Gbrowse : chrX:10772174-10784839 (-) // 100.0 //
Probeset : 1635938_s_at
Accessions : protein= NP_511112; /// NP_727466;, nucleotide= NM_078557; /// NM_167259;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel
FlyMine data for FBgn0017561.
Homophila reports that CG1615 is a close match (4e-17) to human gene KCNK9;TASK3 (NP_057685), a gene associated with Birk-Barel mental retardation dysmorphism syndrome, 612292 (3).
BioGrid reports that CG1615 interacts with CG32584 .
TRiP has 1 RNAi stocks for FBgn0017561 available for purchase.
VDRC has 2 RNAi stocks for FBgn0017561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 ± 04 of 4 0.70Down
Head93 ± 54 of 4 0.50Down
Eye28 ± 34 of 4 0.16Down
Thoracicoabdominal ganglion127 ± 24 of 4 0.70Down
Salivary gland29 ± 43 of 4 0.16Down
Crop5 ± 00 of 4 0.00Down
Midgut111 ± 44 of 4 0.60Down
Tubule38 ± 64 of 4 0.20Down
Hindgut164 ± 44 of 4 0.90None
Heart93 ± 44 of 4 0.52Down
Fat body319 ± 494 of 4 1.78Up
Ovary479 ± 64 of 4 2.70Up
Testis0 ± 00 of 4 0.00Down
Male accessory glands29 ± 44 of 4 0.20Down
Virgin spermatheca223 ± 64 of 4 1.24Up
Mated spermatheca221 ± 114 of 4 1.23Up
Adult carcass146 ± 24 of 4 0.80Down
Larval CNS19 ± 24 of 4 0.11Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut60 ± 54 of 4 0.33Down
Larval tubule17 ± 53 of 4 0.10Down
Larval hindgut413 ± 334 of 4 2.30Up
Larval fat body23 ± 24 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.02Down
Larval carcass5 ± 10 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly180 ± 84 of 4

Looking for CG1615-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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