FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1618-RA through 18771 annotations produced 1 hits

N-ethylmaleimide-sensitive fusion protein (comt):

Annotation Number : CG1618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000346
Gbrowse : chrX:13153027-13156527 (+) // 100.0 //
Probeset : 1639825_at
Accessions : protein= NP_524877;, nucleotide= NM_080138;
Pathway : engulfment // inferred from mutant phenotype /// 0007030 // Golgi organization // inferred from mutant phenotype /// 00
Interpro : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // non-traceable author
FlyMine data for FBgn0000346.
BDGP gene expression has embryonic in situ data for comt: 18 pix of staining in 11 body parts.
Homophila reports that CG1618 is a close match (2e-13) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
BioGrid reports that CG1618 interacts with CG33520 CG1522 CG18102 CG33101 .
TRiP has 3 RNAi stocks for FBgn0000346 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000346 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1938 ± 24	4 of 4	12.30	Up
Head	1030 ± 36	4 of 4	6.60	Up
Eye	1466 ± 66	4 of 4	9.34	Up
Thoracicoabdominal ganglion	2863 ± 66	4 of 4	18.20	Up
Salivary gland	8 ± 4	0 of 4	0.06	Down
Crop	20 ± 1	4 of 4	0.10	Down
Midgut	4 ± 1	0 of 4	0.00	Down
Tubule	4 ± 0	0 of 4	0.00	Down
Hindgut	12 ± 2	0 of 4	0.10	Down
Heart	8 ± 1	2 of 4	0.06	Down
Fat body	7 ± 3	0 of 4	0.04	Down
Ovary	117 ± 4	4 of 4	0.70	Down
Testis	261 ± 5	4 of 4	1.70	Up
Male accessory glands	4 ± 1	0 of 4	0.00	Down
Virgin spermatheca	3 ± 1	0 of 4	0.02	Down
Mated spermatheca	7 ± 2	0 of 4	0.05	Down
Adult carcass	70 ± 4	4 of 4	0.40	Down
Larval CNS	614 ± 28	4 of 4	3.91	Up
Larval Salivary gland	2 ± 0	0 of 4	0.01	Down
Larval midgut	6 ± 1	0 of 4	0.04	Down
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	7 ± 1	0 of 4	0.05	Down
Larval fat body	60 ± 29	3 of 4	0.40	Down
Larval trachea	35 ± 36	4 of 4	0.22	Down
Larval carcass	18 ± 1	1 of 4	0.12	Down
S2 cells (growing)	2 ± 1	0 of 4	0.02	Down
Whole fly	156 ± 8	4 of 4

Looking for CG1618-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720