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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1628-RB through 18771 annotations produced 1 hits



(CG1628):

Annotation Number : CG1628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030218
Gbrowse : chrX:10492175-10496747 (-) // 100.0 //
Probeset : 1635870_at
Accessions : protein= NP_572639;, nucleotide= NM_132411;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0000064 // L-ornithine transmembrane transporter activity // inferred from sequence or structural similarity /// 0000064
FlyMine data for FBgn0030218.
Homophila reports that CG1628 is a close match (7e-11) to human gene UCP3 (NP_003347), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
VDRC has 4 RNAi stocks for FBgn0030218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 0.30Down
Head288 234 of 4 3.60Up
Eye129 254 of 4 1.62None
Thoracicoabdominal ganglion32 34 of 4 0.40Down
Salivary gland41 53 of 4 0.52Down
Crop19 14 of 4 0.20Down
Midgut27 14 of 4 0.30Down
Tubule256 54 of 4 3.20Up
Hindgut25 24 of 4 0.30Down
Heart125 64 of 4 1.57Up
Fat body152 124 of 4 1.92Up
Ovary45 14 of 4 0.60Down
Testis79 34 of 4 1.00None
Male accessory glands46 44 of 4 0.60Down
Virgin spermatheca271 124 of 4 3.41Up
Mated spermatheca258 164 of 4 3.24Up
Adult carcass158 14 of 4 2.00Up
Larval CNS46 64 of 4 0.59Down
Larval Salivary gland32 24 of 4 0.41Down
Larval midgut52 54 of 4 0.66Down
Larval tubule20 14 of 4 0.30Down
Larval hindgut30 24 of 4 0.38Down
Larval fat body21 33 of 4 0.30Down
Larval trachea34 14 of 4 0.43Down
Larval carcass30 14 of 4 0.39Down
S2 cells (growing)79 24 of 4 0.99None
Whole fly79 44 of 4

Looking for CG1628-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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