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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1633-RB through 18771 annotations produced 1 hits



thioredoxin peroxidase (Jafrac1):

Annotation Number : CG1633
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040309
Gbrowse : chrX:13223880-13226029 (+) // 100.0 //
Probeset : 1634219_a_at
Accessions : protein= NP_477510; /// NP_727689;, nucleotide= NM_058162; /// NM_167359;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 000
Interpro : 0004601 // peroxidase activity // non-traceable author statement /// 0004601 // peroxidase activity // inferred from ele
FlyMine data for FBgn0040309.
BDGP gene expression has embryonic in situ data for Jafrac1: 43 pix of staining in 14 body parts.
BioGrid reports that CG1633 interacts with CG4208 CG6762 CG6470 CG7010 .
TRiP has 3 RNAi stocks for FBgn0040309 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain948 214 of 4 0.40Down
Head2082 384 of 4 0.90None
Eye1923 444 of 4 0.85Down
Thoracicoabdominal ganglion1276 194 of 4 0.60Down
Salivary gland1948 934 of 4 0.86Down
Crop2201 684 of 4 1.00None
Midgut2934 444 of 4 1.30Up
Tubule2179 3824 of 4 1.00None
Hindgut1575 324 of 4 0.70Down
Heart2050 594 of 4 0.90None
Fat body1587 1494 of 4 0.70Down
Ovary2577 324 of 4 1.10Up
Testis271 94 of 4 0.10Down
Male accessory glands1858 54 of 4 0.80Down
Virgin spermatheca1026 334 of 4 0.45Down
Mated spermatheca1189 504 of 4 0.53Down
Adult carcass1851 674 of 4 0.80Down
Larval CNS1588 734 of 4 0.70Down
Larval Salivary gland846 544 of 4 0.37Down
Larval midgut2485 2554 of 4 1.10None
Larval tubule2003 564 of 4 0.90None
Larval hindgut1323 344 of 4 0.58Down
Larval fat body356 384 of 4 0.20Down
Larval trachea1180 1094 of 4 0.52Down
Larval carcass1048 1294 of 4 0.46Down
S2 cells (growing)2379 334 of 4 1.05None
Whole fly2266 884 of 4

Looking for CG1633-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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