FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1633-RB through 18771 annotations produced 1 hits

thioredoxin peroxidase (Jafrac1):

Annotation Number : CG1633
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040309
Gbrowse : chrX:13223880-13226029 (+) // 100.0 //
Probeset : 1634219_a_at
Accessions : protein= NP_477510; /// NP_727689;, nucleotide= NM_058162; /// NM_167359;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 000
Interpro : 0004601 // peroxidase activity // non-traceable author statement /// 0004601 // peroxidase activity // inferred from ele
FlyMine data for FBgn0040309.
BDGP gene expression has embryonic in situ data for Jafrac1: 43 pix of staining in 14 body parts.
BioGrid reports that CG1633 interacts with CG4208 CG6762 CG6470 CG7010 .
TRiP has 3 RNAi stocks for FBgn0040309 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040309 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	948 ± 21	4 of 4	0.40	Down
Head	2082 ± 38	4 of 4	0.90	None
Eye	1923 ± 44	4 of 4	0.85	Down
Thoracicoabdominal ganglion	1276 ± 19	4 of 4	0.60	Down
Salivary gland	1948 ± 93	4 of 4	0.86	Down
Crop	2201 ± 68	4 of 4	1.00	None
Midgut	2934 ± 44	4 of 4	1.30	Up
Tubule	2179 ± 382	4 of 4	1.00	None
Hindgut	1575 ± 32	4 of 4	0.70	Down
Heart	2050 ± 59	4 of 4	0.90	None
Fat body	1587 ± 149	4 of 4	0.70	Down
Ovary	2577 ± 32	4 of 4	1.10	Up
Testis	271 ± 9	4 of 4	0.10	Down
Male accessory glands	1858 ± 5	4 of 4	0.80	Down
Virgin spermatheca	1026 ± 33	4 of 4	0.45	Down
Mated spermatheca	1189 ± 50	4 of 4	0.53	Down
Adult carcass	1851 ± 67	4 of 4	0.80	Down
Larval CNS	1588 ± 73	4 of 4	0.70	Down
Larval Salivary gland	846 ± 54	4 of 4	0.37	Down
Larval midgut	2485 ± 255	4 of 4	1.10	None
Larval tubule	2003 ± 56	4 of 4	0.90	None
Larval hindgut	1323 ± 34	4 of 4	0.58	Down
Larval fat body	356 ± 38	4 of 4	0.20	Down
Larval trachea	1180 ± 109	4 of 4	0.52	Down
Larval carcass	1048 ± 129	4 of 4	0.46	Down
S2 cells (growing)	2379 ± 33	4 of 4	1.05	None
Whole fly	2266 ± 88	4 of 4

Looking for CG1633-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720