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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1637-RC through 18771 annotations produced 1 hits



(CG1637):

Annotation Number : CG1637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030245
Gbrowse : chrX:10764614-10771840 (-) // 100.0 //
Probeset : 1623285_at
Accessions : protein= NP_572662; /// NP_727464; /// NP_727465;, nucleotide= NM_132434; /// NM_167257; /// NM_167258;
Interpro : 0003993 // acid phosphatase activity // inferred from sequence or structural similarity /// 0003993 // acid phosphatase
FlyMine data for FBgn0030245.
BDGP gene expression has embryonic in situ data for CG1637: 31 pix of staining in 16 body parts.
BioGrid reports that CG1637 interacts with CG2830 .
TRiP has 1 RNAi stocks for FBgn0030245 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain458 74 of 4 1.30Up
Head520 74 of 4 1.50Up
Eye457 134 of 4 1.32Up
Thoracicoabdominal ganglion515 224 of 4 1.50Up
Salivary gland555 224 of 4 1.61Up
Crop648 104 of 4 1.90Up
Midgut796 194 of 4 2.30Up
Tubule979 1564 of 4 2.80Up
Hindgut503 74 of 4 1.50Up
Heart1502 394 of 4 4.35Up
Fat body644 174 of 4 1.86Up
Ovary361 24 of 4 1.00None
Testis174 24 of 4 0.50Down
Male accessory glands675 404 of 4 2.00Up
Virgin spermatheca798 224 of 4 2.31Up
Mated spermatheca744 214 of 4 2.15Up
Adult carcass573 94 of 4 1.70Up
Larval CNS156 64 of 4 0.45Down
Larval Salivary gland468 154 of 4 1.36Up
Larval midgut738 644 of 4 2.14Up
Larval tubule545 184 of 4 1.60Up
Larval hindgut268 254 of 4 0.78None
Larval fat body692 644 of 4 2.00Up
Larval trachea419 1294 of 4 1.21None
Larval carcass372 354 of 4 1.08None
S2 cells (growing)665 194 of 4 1.93Up
Whole fly345 174 of 4

Looking for CG1637-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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