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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1640-RB through 18771 annotations produced 1 hits



(CG1640):

Annotation Number : CG1640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030478
Gbrowse : chrX:13264638-13274193 (+) // 100.0 //
Probeset : 1636546_s_at
Accessions : protein= NP_572879; /// NP_727696; /// NP_727697; /// NP_727698; /// NP_727699; /// NP_727700;, nucleotide= NM_132651; /// NM_167365; /// NM_167366; /// NM_167367; /// NM_167368; /// NM_167369;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004021 // L-alanine:2-oxoglutarate aminotrans
FlyMine data for FBgn0030478.
Homophila reports that CG1640 is a close match (3e-14) to human gene TAT (NP_000344), a gene associated with Tyrosinemia, type II (3).
VDRC has 2 RNAi stocks for FBgn0030478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1455 ± 634 of 4 1.70Up
Head1506 ± 204 of 4 1.80Up
Eye1739 ± 214 of 4 2.07Up
Thoracicoabdominal ganglion1684 ± 644 of 4 2.00Up
Salivary gland1717 ± 274 of 4 2.05Up
Crop716 ± 44 of 4 0.90Down
Midgut1743 ± 524 of 4 2.10Up
Tubule678 ± 254 of 4 0.80Down
Hindgut2103 ± 424 of 4 2.50Up
Heart1644 ± 274 of 4 1.96Up
Fat body2625 ± 944 of 4 3.13Up
Ovary648 ± 164 of 4 0.80Down
Testis87 ± 34 of 4 0.10Down
Male accessory glands681 ± 294 of 4 0.80Down
Virgin spermatheca2172 ± 464 of 4 2.59Up
Mated spermatheca1945 ± 1794 of 4 2.32Up
Adult carcass1668 ± 404 of 4 2.00Up
Larval CNS580 ± 604 of 4 0.69Down
Larval Salivary gland495 ± 284 of 4 0.59Down
Larval midgut2172 ± 474 of 4 2.59Up
Larval tubule731 ± 854 of 4 0.90None
Larval hindgut2418 ± 364 of 4 2.88Up
Larval fat body209 ± 254 of 4 0.20Down
Larval trachea927 ± 344 of 4 1.11Up
Larval carcass1673 ± 994 of 4 1.99Up
S2 cells (growing)603 ± 64 of 4 0.72Down
Whole fly839 ± 254 of 4

Looking for CG1640-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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