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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1650-RA through 18771 annotations produced 1 hits



unplugged (unpg):

Annotation Number : CG1650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015561
Gbrowse : chr2R:5082718-5087377 (+) // 100.0 //
Probeset : 1638888_at
Accessions : protein= NP_477146;, nucleotide= NM_057798;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007420 // brain development // inferred from mutant phenotype
Interpro : open tracheal system // traceable author statement /// 0045449 // regulation of transcription // inferred from mutant p
FlyMine data for FBgn0015561.
BDGP gene expression has embryonic in situ data for unpg: 4 pix of staining in 1 body parts.
Homophila reports that CG1650 is a close match (8e-11) to human gene EMX2 (NP_004089), a gene associated with Schizencephaly, 269160 (3).
TRiP has 1 RNAi stocks for FBgn0015561 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.50None
Head0 00 of 4 0.40None
Eye0 00 of 4 0.54None
Thoracicoabdominal ganglion3 10 of 4 2.10None
Salivary gland1 00 of 4 1.05None
Crop0 00 of 4 0.40None
Midgut0 00 of 4 0.60None
Tubule0 00 of 4 0.60Down
Hindgut0 00 of 4 0.30None
Heart0 00 of 4 0.48None
Fat body1 00 of 4 0.81None
Ovary0 00 of 4 0.30None
Testis0 00 of 4 0.30None
Male accessory glands0 00 of 4 0.40None
Virgin spermatheca1 00 of 4 1.03None
Mated spermatheca1 00 of 4 0.87None
Adult carcass8 40 of 4 5.10None
Larval CNS10 20 of 4 6.40Up
Larval Salivary gland0 00 of 4 0.57None
Larval midgut0 00 of 4 0.51None
Larval tubule1 00 of 4 0.60None
Larval hindgut0 00 of 4 0.41None
Larval fat body1 00 of 4 0.80None
Larval trachea2 10 of 4 1.78None
Larval carcass1 00 of 4 0.94None
S2 cells (growing)0 00 of 4 0.35None
Whole fly1 00 of 4

Looking for CG1650-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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