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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1656-RA through 18771 annotations produced 1 hits


lectin-44Ca (lectin-46Ca):

Annotation Number : CG1656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040093
Gbrowse : chr2R:5704804-5706040 (+) // 100.0 //
Probeset : 1629391_at
Accessions : protein= NP_652633;, nucleotide= NM_144376;
Pathway : post-mating // inferred from mutant phenotype /// 0046692 // sperm competition // inferred from direct assay"
FlyMine data for FBgn0040093.
BDGP gene expression has embryonic in situ data for lectin-46Ca: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0040093 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.09Down
Crop4 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body3 ± 40 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis9 ± 41 of 4 0.10Down
Male accessory glands8092 ± 2874 of 479.90Up
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS1 ± 20 of 4 0.02Down
Larval Salivary gland5 ± 00 of 4 0.05Down
Larval midgut5 ± 00 of 4 0.05Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.04Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea3 ± 30 of 4 0.03Down
Larval carcass5 ± 20 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly101 ± 74 of 4

Looking for CG1656-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime