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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1662-RA through 18771 annotations produced 1 hits



(CG1662):

Annotation Number : CG1662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030481
Gbrowse : chrX:13281631-13282879 (+) // 100.0 //
Probeset : 1637048_at
Accessions : protein= NP_572883;, nucleotide= NM_132655;
Pathway : 0005779 // integral to peroxisomal membrane // inferred from sequence or structural similarity /// 0016021 // integral t
FlyMine data for FBgn0030481.
BDGP gene expression has embryonic in situ data for CG1662: 4 pix of staining in 1 body parts.
Homophila reports that CG1662 is a close match (1e-12) to human gene MPV17 (NP_002428), a gene associated with Mitochondrial DNA depletion syndrome, hepatocerebral form, 251880 (3).
VDRC has 5 RNAi stocks for FBgn0030481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 64 of 4 0.50Down
Head112 ± 74 of 4 0.70Down
Eye114 ± 44 of 4 0.75Down
Thoracicoabdominal ganglion62 ± 44 of 4 0.40Down
Salivary gland188 ± 74 of 4 1.23Up
Crop154 ± 54 of 4 1.00None
Midgut143 ± 74 of 4 0.90None
Tubule207 ± 244 of 4 1.40Up
Hindgut157 ± 24 of 4 1.00None
Heart113 ± 64 of 4 0.74Down
Fat body168 ± 254 of 4 1.10None
Ovary197 ± 34 of 4 1.30Up
Testis329 ± 84 of 4 2.20Up
Male accessory glands170 ± 104 of 4 1.10None
Virgin spermatheca166 ± 44 of 4 1.09None
Mated spermatheca129 ± 44 of 4 0.84Down
Adult carcass214 ± 44 of 4 1.40Up
Larval CNS55 ± 84 of 4 0.36Down
Larval Salivary gland101 ± 74 of 4 0.67Down
Larval midgut120 ± 84 of 4 0.79Down
Larval tubule76 ± 34 of 4 0.50Down
Larval hindgut111 ± 74 of 4 0.73Down
Larval fat body98 ± 94 of 4 0.60Down
Larval trachea72 ± 74 of 4 0.47Down
Larval carcass162 ± 154 of 4 1.06None
S2 cells (growing)130 ± 44 of 4 0.85Down
Whole fly153 ± 74 of 4

Looking for CG1662-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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