FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1669-RA through 18771 annotations produced 2 hits

/// kappaB-Ras (CG30503 /// kappaB-Ras):

Annotation Number : CG30503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040513 /// FBgn0050503
Gbrowse : chr2R:3331328-3332131 (-) // 99.46 //
Probeset : 1636217_at
Accessions : protein= NP_001137612; /// NP_001137613; /// NP_610278; /// NP_724557;, nucleotide= NM_001144140; /// NM_001144141; /// NM_136434; /// NM_165524;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferre
FlyMine data for FBgn0040513 /// FBgn0050503.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	94 ± 3	4 of 4	0.70	None
Head	482 ± 36	4 of 4	3.80	Up
Eye	274 ± 30	4 of 4	2.16	Up
Thoracicoabdominal ganglion	96 ± 6	4 of 4	0.80	None
Salivary gland	30 ± 3	3 of 4	0.24	Down
Crop	34 ± 2	4 of 4	0.30	Down
Midgut	26 ± 1	4 of 4	0.20	Down
Tubule	17 ± 1	2 of 4	0.10	Down
Hindgut	70 ± 5	4 of 4	0.60	Down
Heart	636 ± 29	4 of 4	5.01	Up
Fat body	925 ± 87	4 of 4	7.28	Up
Ovary	8 ± 0	4 of 4	0.10	Down
Testis	5 ± 0	0 of 4	0.00	Down
Male accessory glands	23 ± 3	4 of 4	0.20	Down
Virgin spermatheca	279 ± 21	4 of 4	2.20	Up
Mated spermatheca	399 ± 32	4 of 4	3.15	Up
Adult carcass	512 ± 11	4 of 4	4.00	Up
Larval CNS	52 ± 8	4 of 4	0.41	Down
Larval Salivary gland	25 ± 2	3 of 4	0.20	Down
Larval midgut	10 ± 1	0 of 4	0.08	Down
Larval tubule	16 ± 1	4 of 4	0.10	Down
Larval hindgut	30 ± 5	4 of 4	0.24	Down
Larval fat body	301 ± 26	4 of 4	2.40	Up
Larval trachea	34 ± 11	4 of 4	0.27	Down
Larval carcass	15 ± 0	4 of 4	0.12	Down
S2 cells (growing)	31 ± 1	4 of 4	0.25	Down
Whole fly	127 ± 13	4 of 4

/// kappaB-Ras (CG30503 /// kappaB-Ras):

Annotation Number : CG1669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040513 /// FBgn0050503
Gbrowse : chr2R:3332527-3333266 (-) // 100.0 //
Probeset : 1630406_at
Accessions : protein= NP_001137612; /// NP_001137613; /// NP_610278; /// NP_724557;, nucleotide= NM_001144140; /// NM_001144141; /// NM_136434; /// NM_165524;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferre
FlyMine data for FBgn0040513 /// FBgn0050503.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	94 ± 4	4 of 4	2.40	Up
Head	48 ± 3	4 of 4	1.30	None
Eye	77 ± 4	4 of 4	2.01	Up
Thoracicoabdominal ganglion	82 ± 6	4 of 4	2.10	Up
Salivary gland	99 ± 8	4 of 4	2.57	Up
Crop	60 ± 2	4 of 4	1.60	Up
Midgut	49 ± 2	4 of 4	1.30	Up
Tubule	37 ± 1	3 of 4	1.00	None
Hindgut	54 ± 2	4 of 4	1.40	Up
Heart	45 ± 2	4 of 4	1.18	None
Fat body	19 ± 3	0 of 4	0.50	Down
Ovary	54 ± 3	4 of 4	1.40	Up
Testis	22 ± 1	4 of 4	0.60	Down
Male accessory glands	126 ± 5	4 of 4	3.30	Up
Virgin spermatheca	24 ± 4	1 of 4	0.63	Down
Mated spermatheca	35 ± 5	3 of 4	0.92	None
Adult carcass	23 ± 1	0 of 4	0.60	Down
Larval CNS	52 ± 3	4 of 4	1.35	Up
Larval Salivary gland	143 ± 10	4 of 4	3.71	Up
Larval midgut	38 ± 2	4 of 4	0.99	None
Larval tubule	62 ± 3	4 of 4	1.60	Up
Larval hindgut	58 ± 2	4 of 4	1.52	Up
Larval fat body	26 ± 2	2 of 4	0.70	Down
Larval trachea	90 ± 8	4 of 4	2.33	Up
Larval carcass	60 ± 3	4 of 4	1.56	Up
S2 cells (growing)	61 ± 1	4 of 4	1.60	Up
Whole fly	38 ± 2	4 of 4

Looking for CG1669-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720