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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16708-RA through 18771 annotations produced 1 hits



Ceramide kinase (Cerk):

Annotation Number : CG16708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037315
Gbrowse : chr3R:1184584-1194027 (-) // 100.0 //
Probeset : 1629233_s_at
Accessions : protein= NP_649530; /// NP_730923;, nucleotide= NM_141273; /// NM_169050;
Pathway : 0000299 // integral to membrane of membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inf
Interpro : 0001729 // ceramide kinase activity // inferred from direct assay /// 0004143 // diacylglycerol kinase activity // infer
FlyMine data for FBgn0037315.
BDGP gene expression has embryonic in situ data for CG16708: 10 pix of staining in 6 body parts.
Homophila reports that CG16708 is a close match (9e-12) to human gene CERKL (NP_001025483), a gene associated with Retinitis pigmentosa-26, 608380 (3).
BioGrid reports that CG16708 interacts with CG3668 CG6570 CG5829 .
TRiP has 1 RNAi stocks for FBgn0037315 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037315 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 ± 114 of 4 1.50Up
Head256 ± 134 of 4 1.40Up
Eye212 ± 24 of 4 1.15Up
Thoracicoabdominal ganglion278 ± 54 of 4 1.50Up
Salivary gland489 ± 104 of 4 2.65Up
Crop628 ± 154 of 4 3.40Up
Midgut210 ± 84 of 4 1.10None
Tubule166 ± 154 of 4 0.90None
Hindgut626 ± 184 of 4 3.40Up
Heart114 ± 94 of 4 0.62Down
Fat body195 ± 184 of 4 1.06None
Ovary280 ± 84 of 4 1.50Up
Testis193 ± 24 of 4 1.00None
Male accessory glands212 ± 144 of 4 1.10None
Virgin spermatheca161 ± 64 of 4 0.87None
Mated spermatheca199 ± 54 of 4 1.08None
Adult carcass223 ± 44 of 4 1.20Up
Larval CNS100 ± 114 of 4 0.55Down
Larval Salivary gland189 ± 54 of 4 1.03None
Larval midgut209 ± 124 of 4 1.13None
Larval tubule138 ± 104 of 4 0.80Down
Larval hindgut359 ± 374 of 4 1.95Up
Larval fat body231 ± 234 of 4 1.30None
Larval trachea153 ± 174 of 4 0.83Down
Larval carcass191 ± 104 of 4 1.04None
S2 cells (growing)199 ± 84 of 4 1.08None
Whole fly184 ± 84 of 4

Looking for CG16708-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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