FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16713-RA through 18771 annotations produced 1 hits

(CG16713):

Annotation Number : CG16713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031560
Gbrowse : chr2L:3695027-3695406 (-) // 100.0 //
Probeset : 1624057_at
Accessions : protein= NP_608799;, nucleotide= NM_134955;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0031560.
VDRC has 5 RNAi stocks for FBgn0031560 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	3 of 4	0.00	Down
Head	1058 ± 34	4 of 4	2.90	Up
Eye	984 ± 179	4 of 4	2.68	Up
Thoracicoabdominal ganglion	23 ± 2	4 of 4	0.10	Down
Salivary gland	115 ± 26	4 of 4	0.31	Down
Crop	191 ± 21	4 of 4	0.50	Down
Midgut	10 ± 5	1 of 4	0.00	Down
Tubule	59 ± 21	3 of 4	0.20	Down
Hindgut	3451 ± 89	4 of 4	9.40	Up
Heart	1461 ± 78	4 of 4	3.97	Up
Fat body	3425 ± 456	4 of 4	9.31	Up
Ovary	3 ± 1	1 of 4	0.00	Down
Testis	2 ± 0	0 of 4	0.00	Down
Male accessory glands	21 ± 5	1 of 4	0.10	Down
Virgin spermatheca	3119 ± 103	4 of 4	8.48	Up
Mated spermatheca	2412 ± 178	4 of 4	6.56	Up
Adult carcass	1304 ± 108	4 of 4	3.50	Up
Larval CNS	7 ± 1	0 of 4	0.02	Down
Larval Salivary gland	60 ± 6	4 of 4	0.16	Down
Larval midgut	7 ± 1	0 of 4	0.02	Down
Larval tubule	12 ± 2	3 of 4	0.00	Down
Larval hindgut	454 ± 53	4 of 4	1.24	None
Larval fat body	2817 ± 395	4 of 4	7.70	Up
Larval trachea	28 ± 15	4 of 4	0.08	Down
Larval carcass	32 ± 8	3 of 4	0.09	Down
S2 cells (growing)	3 ± 0	0 of 4	0.01	Down
Whole fly	368 ± 16	4 of 4

Looking for CG16713-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720