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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16717-RA through 18771 annotations produced 1 hits



(CG16717):

Annotation Number : CG16717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036028
Gbrowse : chr3L:9672328-9674164 (+) // 100.0 //
Probeset : 1624186_at
Accessions : protein= NP_648343;, nucleotide= NM_140086;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0036028.
BioGrid reports that CG16717 interacts with CG6757 .
VDRC has 2 RNAi stocks for FBgn0036028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 24 of 4 1.80Up
Head72 64 of 4 0.90None
Eye72 14 of 4 0.93None
Thoracicoabdominal ganglion111 14 of 4 1.40Up
Salivary gland79 64 of 4 1.01None
Crop111 34 of 4 1.40Up
Midgut64 14 of 4 0.80Down
Tubule82 44 of 4 1.10None
Hindgut52 14 of 4 0.70Down
Heart71 14 of 4 0.91None
Fat body53 114 of 4 0.68Down
Ovary111 24 of 4 1.40Up
Testis76 44 of 4 1.00None
Male accessory glands59 44 of 4 0.80Down
Virgin spermatheca36 34 of 4 0.47Down
Mated spermatheca40 44 of 4 0.51Down
Adult carcass58 54 of 4 0.70Down
Larval CNS114 104 of 4 1.46Up
Larval Salivary gland59 34 of 4 0.76Down
Larval midgut70 34 of 4 0.90None
Larval tubule105 54 of 4 1.30Up
Larval hindgut64 14 of 4 0.83Down
Larval fat body49 64 of 4 0.60Down
Larval trachea141 174 of 4 1.81Up
Larval carcass118 74 of 4 1.51Up
S2 cells (growing)91 34 of 4 1.17Up
Whole fly78 34 of 4

Looking for CG16717-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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