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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16718-RA through 18771 annotations produced 1 hits



(CG16718):

Annotation Number : CG16718
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038721
Gbrowse : chr3R:15459139-15468466 (-) // 100.0 //
Probeset : 1640734_a_at
Accessions : protein= NP_650820; /// NP_732439;, nucleotide= NM_142563; /// NM_169867;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038721.
Homophila reports that CG16718 is a close match (6e-168) to human gene GDD1;TMEM16E (NP_998764), a gene associated with Gnthodiaphyseal dysplasia, 166260 (3).
VDRC has 2 RNAi stocks for FBgn0038721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 ± 14 of 4 1.60Up
Head137 ± 84 of 4 1.60Up
Eye60 ± 74 of 4 0.69None
Thoracicoabdominal ganglion145 ± 44 of 4 1.70Up
Salivary gland46 ± 54 of 4 0.54Down
Crop121 ± 24 of 4 1.40Up
Midgut25 ± 14 of 4 0.30Down
Tubule286 ± 114 of 4 3.30Up
Hindgut152 ± 24 of 4 1.80Up
Heart98 ± 164 of 4 1.14None
Fat body267 ± 124 of 4 3.08Up
Ovary180 ± 24 of 4 2.10Up
Testis33 ± 14 of 4 0.40Down
Male accessory glands21 ± 14 of 4 0.20Down
Virgin spermatheca232 ± 254 of 4 2.68Up
Mated spermatheca227 ± 224 of 4 2.62Up
Adult carcass185 ± 54 of 4 2.10Up
Larval CNS91 ± 24 of 4 1.05None
Larval Salivary gland101 ± 94 of 4 1.17None
Larval midgut28 ± 24 of 4 0.33Down
Larval tubule271 ± 44 of 4 3.10Up
Larval hindgut491 ± 264 of 4 5.67Up
Larval fat body451 ± 214 of 4 5.20Up
Larval trachea67 ± 144 of 4 0.78None
Larval carcass347 ± 254 of 4 4.01Up
S2 cells (growing)194 ± 74 of 4 2.24Up
Whole fly86 ± 104 of 4

Looking for CG16718-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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