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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16728-RA through 18771 annotations produced 1 hits



CG16728 (Git):

Annotation Number : CG16728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033539
Gbrowse : chr2R:6529322-6532921 (-) // 99.84 //
Probeset : 1641554_at
Accessions : protein= NP_610599;, nucleotide= NM_136755;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0031252 // cell leading edge // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferre
FlyMine data for FBgn0033539.
BioGrid reports that CG16728 interacts with CG7611 CG1676 CG16788 CG17383 CG18608 CG18766 CG2830 CG3214 CG3294 CG3320 CG3929 CG4533 CG4617 CG5180 CG5393 CG6181 CG6801 CG7757 CG7803 CG8014 CG8449 CG8548 CG9252 CG9373 CG9771 .
TRiP has 1 RNAi stocks for FBgn0033539 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033539 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 24 of 4 0.40Down
Head102 64 of 4 0.70Down
Eye85 34 of 4 0.60Down
Thoracicoabdominal ganglion66 24 of 4 0.50Down
Salivary gland100 64 of 4 0.70Down
Crop148 44 of 4 1.00None
Midgut128 54 of 4 0.90None
Tubule60 14 of 4 0.40Down
Hindgut103 34 of 4 0.70Down
Heart58 34 of 4 0.41Down
Fat body62 134 of 4 0.43Down
Ovary407 164 of 4 2.80Up
Testis63 24 of 4 0.40Down
Male accessory glands93 44 of 4 0.70Down
Virgin spermatheca73 24 of 4 0.51Down
Mated spermatheca92 94 of 4 0.65Down
Adult carcass90 84 of 4 0.60Down
Larval CNS186 54 of 4 1.30Up
Larval Salivary gland140 30 of 4 0.97None
Larval midgut143 44 of 4 0.99None
Larval tubule144 44 of 4 1.00None
Larval hindgut134 34 of 4 0.93None
Larval fat body86 44 of 4 0.60Down
Larval trachea109 104 of 4 0.76Down
Larval carcass172 54 of 4 1.20Up
S2 cells (growing)297 84 of 4 2.06Up
Whole fly143 74 of 4

Looking for CG16728-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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