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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16732-RA through 18771 annotations produced 1 hits



(CG16732):

Annotation Number : CG16732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039086
Gbrowse : chr3R:19360794-19362407 (-) // 100.0 //
Probeset : 1637192_at
Accessions : protein= NP_651153;, nucleotide= NM_142896;
Interpro : "0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from sequence or structural simil
FlyMine data for FBgn0039086.
Homophila reports that CG16732 is a close match (1e-31) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 3 RNAi stocks for FBgn0039086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.31Down
Crop3 ± 10 of 4 0.20Down
Midgut200 ± 24 of 412.10Up
Tubule19 ± 13 of 4 1.20None
Hindgut37 ± 44 of 4 2.30Up
Heart3 ± 00 of 4 0.21Down
Fat body3 ± 30 of 4 0.23Down
Ovary1 ± 10 of 4 0.10Down
Testis8 ± 01 of 4 0.50Down
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca2 ± 10 of 4 0.16Down
Mated spermatheca2 ± 00 of 4 0.13Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS0 ± 00 of 4 0.05Down
Larval Salivary gland2 ± 10 of 4 0.12Down
Larval midgut154 ± 124 of 4 9.29Up
Larval tubule7 ± 00 of 4 0.40Down
Larval hindgut46 ± 24 of 4 2.78Up
Larval fat body3 ± 00 of 4 0.20Down
Larval trachea1 ± 00 of 4 0.09Down
Larval carcass5 ± 10 of 4 0.34Down
S2 cells (growing)0 ± 00 of 4 0.04Down
Whole fly16 ± 24 of 4

Looking for CG16732-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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