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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16733-RA through 18771 annotations produced 1 hits



(CG16733):

Annotation Number : CG16733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037665
Gbrowse : chr3R:5077574-5078687 (+) // 100.0 //
Probeset : 1638309_at
Accessions : protein= NP_649870;, nucleotide= NM_141613;
Interpro : 0004062 // aryl sulfotransferase activity // inferred from sequence or structural similarity /// 0004062 // aryl sulfotr
FlyMine data for FBgn0037665.
VDRC has 3 RNAi stocks for FBgn0037665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.80None
Head0 ± 00 of 4 1.00None
Eye3 ± 10 of 4 3.73None
Thoracicoabdominal ganglion1 ± 00 of 4 1.90None
Salivary gland6 ± 10 of 4 7.42None
Crop0 ± 00 of 4 0.80None
Midgut2 ± 10 of 4 2.80None
Tubule1 ± 00 of 4 2.30None
Hindgut0 ± 00 of 4 0.80None
Heart0 ± 00 of 4 0.88None
Fat body3 ± 10 of 4 3.85None
Ovary1 ± 00 of 4 1.50None
Testis3 ± 00 of 4 4.40None
Male accessory glands10 ± 30 of 412.60None
Virgin spermatheca1 ± 00 of 4 1.18None
Mated spermatheca2 ± 10 of 4 3.21None
Adult carcass2 ± 10 of 4 3.30None
Larval CNS1 ± 10 of 4 2.24None
Larval Salivary gland2 ± 10 of 4 2.85None
Larval midgut2 ± 10 of 4 2.42None
Larval tubule0 ± 00 of 4 0.80None
Larval hindgut0 ± 00 of 4 0.58None
Larval fat body0 ± 00 of 4 1.10None
Larval trachea0 ± 00 of 4 1.06None
Larval carcass6 ± 31 of 4 7.82None
S2 cells (growing)0 ± 00 of 4 1.00None
Whole fly0 ± 00 of 4

Looking for CG16733-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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