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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16734-RA through 18771 annotations produced 1 hits



(CG16734):

Annotation Number : CG16734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037667
Gbrowse : chr3R:5080878-5082434 (+) // 100.0 //
Probeset : 1633865_at
Accessions : protein= NP_001163566; /// NP_649872;, nucleotide= NM_001170095; /// NM_141615;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037667.
BioGrid reports that CG16734 interacts with CG17927 CG5434 .
VDRC has 2 RNAi stocks for FBgn0037667 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 24 of 4 0.50Down
Head29 ± 24 of 4 0.30Down
Eye31 ± 14 of 4 0.33Down
Thoracicoabdominal ganglion57 ± 34 of 4 0.60Down
Salivary gland27 ± 14 of 4 0.29Down
Crop33 ± 14 of 4 0.40Down
Midgut35 ± 24 of 4 0.40Down
Tubule34 ± 14 of 4 0.40Down
Hindgut25 ± 04 of 4 0.30Down
Heart29 ± 24 of 4 0.32Down
Fat body28 ± 64 of 4 0.30Down
Ovary162 ± 24 of 4 1.70Up
Testis59 ± 14 of 4 0.60Down
Male accessory glands64 ± 44 of 4 0.70Down
Virgin spermatheca27 ± 24 of 4 0.29Down
Mated spermatheca31 ± 14 of 4 0.33Down
Adult carcass27 ± 24 of 4 0.30Down
Larval CNS180 ± 154 of 4 1.91Up
Larval Salivary gland57 ± 34 of 4 0.61Down
Larval midgut26 ± 24 of 4 0.28Down
Larval tubule55 ± 34 of 4 0.60Down
Larval hindgut44 ± 24 of 4 0.47Down
Larval fat body37 ± 34 of 4 0.40Down
Larval trachea110 ± 14 of 4 1.17None
Larval carcass50 ± 14 of 4 0.54Down
S2 cells (growing)92 ± 64 of 4 0.98None
Whole fly94 ± 54 of 4

Looking for CG16734-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime