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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1674-RA through 18771 annotations produced 2 hits



(CG1674):

Annotation Number : CG1674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039897
Gbrowse : chr4:252108-265205 (+) // 100.0 //
Probeset : 1625476_a_at
Accessions : protein= NP_001162821; /// NP_001162822; /// NP_001162823; /// NP_651913; /// NP_726553; /// NP_726554; /// NP_995588;, nucleotide= NM_001169350; /// NM_001169351; /// NM_001169352; /// NM_143656; /// NM_166746; /// NM_166747; /// NM_205866;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039897.
BDGP gene expression has embryonic in situ data for CG1674: 18 pix of staining in 3 body parts.
BioGrid reports that CG1674 interacts with CG3157 CG18449 CG4303 CG5009 CG5327 CG7347 CG9520 .
VDRC has 3 RNAi stocks for FBgn0039897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 03 of 4 0.10Down
Head121 134 of 4 0.90None
Eye16 24 of 4 0.12Down
Thoracicoabdominal ganglion22 13 of 4 0.20Down
Salivary gland5 20 of 4 0.04Down
Crop633 154 of 4 4.60Up
Midgut32 03 of 4 0.20Down
Tubule25 52 of 4 0.20Down
Hindgut212 124 of 4 1.50Up
Heart87 124 of 4 0.64Down
Fat body10 40 of 4 0.07Down
Ovary2 00 of 4 0.00Down
Testis11 12 of 4 0.10Down
Male accessory glands52 54 of 4 0.40Down
Virgin spermatheca4 10 of 4 0.03Down
Mated spermatheca14 30 of 4 0.10Down
Adult carcass449 184 of 4 3.30Up
Larval CNS6 20 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut13 40 of 4 0.10Down
Larval tubule35 54 of 4 0.30Down
Larval hindgut184 94 of 4 1.34Up
Larval fat body2 10 of 4 0.00Down
Larval trachea30 103 of 4 0.22Down
Larval carcass1248 994 of 4 9.09Up
S2 cells (growing)19 12 of 4 0.14Down
Whole fly137 84 of 4



():

Annotation Number : CG1674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr4:252108-265205 (+) // 100.0 //
Probeset : 1626694_at
Accessions : protein= NP_001162821; /// NP_001162822; /// NP_001162823; /// NP_651913; /// NP_726553; /// NP_726554; /// NP_995588;, nucleotide= NM_001169350; /// NM_001169351; /// NM_001169352; /// NM_143656; /// NM_166746; /// NM_166747; /// NM_205866;
Interpro : 0005515 // protein binding // inferred from physical interaction
BioGrid reports that CG1674 interacts with CG3157 CG18449 CG4303 CG5009 CG5327 CG7347 CG9520 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head22 34 of 4 0.60None
Eye3 10 of 4 0.08Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland1 00 of 4 0.04Down
Crop123 14 of 4 3.00Up
Midgut12 13 of 4 0.30Down
Tubule4 00 of 4 0.10Down
Hindgut28 34 of 4 0.70None
Heart47 44 of 4 1.15None
Fat body3 30 of 4 0.08Down
Ovary2 00 of 4 0.00Down
Testis6 12 of 4 0.10Down
Male accessory glands17 13 of 4 0.40None
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca2 10 of 4 0.06Down
Adult carcass126 144 of 4 3.00Up
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut9 13 of 4 0.22Down
Larval tubule4 00 of 4 0.10Down
Larval hindgut14 14 of 4 0.36None
Larval fat body2 10 of 4 0.10Down
Larval trachea3 20 of 4 0.09Down
Larval carcass14 14 of 4 0.36None
S2 cells (growing)0 00 of 4 0.01Down
Whole fly41 84 of 4

Looking for CG1674-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime