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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16749-RA through 18771 annotations produced 1 hits



(CG16749):

Annotation Number : CG16749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037678
Gbrowse : chr3R:5156600-5157617 (-) // 100.0 //
Probeset : 1627657_at
Accessions : protein= NP_649881;, nucleotide= NM_141624;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037678.
BDGP gene expression has embryonic in situ data for CG16749: 6 pix of staining in 1 body parts.
Homophila reports that CG16749 is a close match (3e-12) to human gene F10 (NP_000495), a gene associated with Factor X deficiency (3).
VDRC has 5 RNAi stocks for FBgn0037678 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 23 of 4 0.10Down
Head3 ± 10 of 4 0.00Down
Eye14 ± 23 of 4 0.05Down
Thoracicoabdominal ganglion19 ± 23 of 4 0.10Down
Salivary gland11 ± 20 of 4 0.04Down
Crop8 ± 11 of 4 0.00Down
Midgut3189 ± 1174 of 410.90Up
Tubule9 ± 20 of 4 0.00Down
Hindgut129 ± 44 of 4 0.40Down
Heart14 ± 24 of 4 0.05Down
Fat body25 ± 51 of 4 0.09Down
Ovary2 ± 10 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands10 ± 30 of 4 0.00Down
Virgin spermatheca28 ± 34 of 4 0.10Down
Mated spermatheca14 ± 31 of 4 0.05Down
Adult carcass10 ± 30 of 4 0.00Down
Larval CNS12 ± 04 of 4 0.04Down
Larval Salivary gland7 ± 10 of 4 0.03Down
Larval midgut2145 ± 934 of 4 7.35Up
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut19 ± 34 of 4 0.07Down
Larval fat body8 ± 10 of 4 0.00Down
Larval trachea5 ± 20 of 4 0.02Down
Larval carcass13 ± 22 of 4 0.05Down
S2 cells (growing)8 ± 10 of 4 0.03Down
Whole fly291 ± 434 of 4

Looking for CG16749-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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