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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16752-RA through 18771 annotations produced 2 hits



sex peptide receptor (SPR):

Annotation Number : S.CX000568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029768
Gbrowse : chrX:5330684-5360574 (+) // 100.0 //
Probeset : 1634888_at
Accessions : protein= NP_572225;, nucleotide= NM_131997;
Pathway : post-mating // inferred from mutant phenotype /// 0048042 // regulation of post-mating oviposition // inferred from mut
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic
FlyMine data for FBgn0029768.
BDGP gene expression has embryonic in situ data for CG16752: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0029768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 1.20None
Head2 10 of 4 0.80None
Eye3 10 of 4 1.20None
Thoracicoabdominal ganglion8 13 of 4 2.70Up
Salivary gland5 20 of 4 1.77None
Crop2 10 of 4 0.70None
Midgut3 00 of 4 1.20None
Tubule5 01 of 4 1.80Up
Hindgut6 02 of 4 1.90Up
Heart0 00 of 4 0.20Down
Fat body6 22 of 4 2.07None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.60None
Male accessory glands7 21 of 4 2.40None
Virgin spermatheca27 24 of 4 8.55Up
Mated spermatheca35 74 of 410.93Up
Adult carcass3 10 of 4 1.00None
Larval CNS4 12 of 4 1.38None
Larval Salivary gland3 00 of 4 1.21None
Larval midgut5 11 of 4 1.83None
Larval tubule2 00 of 4 0.60None
Larval hindgut2 10 of 4 0.84None
Larval fat body4 10 of 4 1.40None
Larval trachea2 10 of 4 0.77None
Larval carcass2 00 of 4 0.92None
S2 cells (growing)0 00 of 4 0.18Down
Whole fly3 01 of 4



sex peptide receptor (SPR):

Annotation Number : CG16752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029768
Gbrowse : chrX:5340693-5387581 (+) // 99.71 //
Probeset : 1623478_at
Accessions : protein= NP_572225;, nucleotide= NM_131997;
Pathway : post-mating // inferred from mutant phenotype /// 0048042 // regulation of post-mating oviposition // inferred from mut
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic
FlyMine data for FBgn0029768.
BDGP gene expression has embryonic in situ data for CG16752: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0029768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain478 134 of 4 5.40Up
Head183 254 of 4 2.10Up
Eye35 24 of 4 0.40Down
Thoracicoabdominal ganglion1033 354 of 411.70Up
Salivary gland11 22 of 4 0.13Down
Crop7 23 of 4 0.10Down
Midgut4 11 of 4 0.10Down
Tubule143 534 of 4 1.60None
Hindgut30 54 of 4 0.30Down
Heart15 04 of 4 0.17Down
Fat body33 94 of 4 0.38Down
Ovary8 04 of 4 0.10Down
Testis1 10 of 4 0.00Down
Male accessory glands11 33 of 4 0.10Down
Virgin spermatheca1682 1454 of 419.04Up
Mated spermatheca1724 2674 of 419.51Up
Adult carcass70 44 of 4 0.80None
Larval CNS70 44 of 4 0.80None
Larval Salivary gland7 01 of 4 0.08Down
Larval midgut20 14 of 4 0.23Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut24 04 of 4 0.27Down
Larval fat body6 21 of 4 0.10Down
Larval trachea4 22 of 4 0.05Down
Larval carcass5 02 of 4 0.07Down
S2 cells (growing)4 02 of 4 0.05Down
Whole fly88 54 of 4

Looking for CG16752-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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