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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16761-RA through 18771 annotations produced 1 hits



Cyp4d20 (Cyp4d20):

Annotation Number : CG16761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035344
Gbrowse : chr3L:2476250-2478444 (-) // 100.0 //
Probeset : 1625338_at
Accessions : protein= NP_647723;, nucleotide= NM_139466;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0035344.
BDGP gene expression has embryonic in situ data for Cyp4d20: 2 pix of staining in 1 body parts.
Homophila reports that CG16761 is a close match (1e-12) to human gene CYP2C8 (NP_000761), a gene associated with Rhabdomyolysis, cerivastatin-induced (3).
VDRC has 2 RNAi stocks for FBgn0035344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.10Down
Head263 144 of 4 4.60Up
Eye193 344 of 4 3.38Up
Thoracicoabdominal ganglion4 00 of 4 0.10Down
Salivary gland4 10 of 4 0.08Down
Crop10 11 of 4 0.20Down
Midgut8 10 of 4 0.20Down
Tubule7 10 of 4 0.10Down
Hindgut10 12 of 4 0.20Down
Heart409 294 of 4 7.17Up
Fat body509 214 of 4 8.91Up
Ovary0 00 of 4 0.00Down
Testis1 10 of 4 0.00Down
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca354 224 of 4 6.20Up
Mated spermatheca346 114 of 4 6.06Up
Adult carcass285 244 of 4 5.00Up
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.07Down
Larval midgut3 10 of 4 0.06Down
Larval tubule10 31 of 4 0.20Down
Larval hindgut2 00 of 4 0.04Down
Larval fat body3 00 of 4 0.10Down
Larval trachea83 64 of 4 1.47Up
Larval carcass33 44 of 4 0.59Down
S2 cells (growing)3 10 of 4 0.06Down
Whole fly57 64 of 4

Looking for CG16761-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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