FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1677-RB through 18771 annotations produced 1 hits

(CG1677):

Annotation Number : CG1677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029941
Gbrowse : chrX:7175121-7299793 (-) // 100.0 //
Probeset : 1634824_a_at
Accessions : protein= NP_572387;, nucleotide= NM_132159;
Pathway : via spliceosome // inferred by curator"
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0071011 // precatalytic spliceosome // inferre
FlyMine data for FBgn0029941.
BioGrid reports that CG1677 interacts with CG6394 .
VDRC has 2 RNAi stocks for FBgn0029941 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	376 ± 22	4 of 4	1.20	None
Head	156 ± 5	4 of 4	0.50	Down
Eye	177 ± 5	4 of 4	0.57	Down
Thoracicoabdominal ganglion	322 ± 13	4 of 4	1.00	None
Salivary gland	226 ± 6	4 of 4	0.73	Down
Crop	174 ± 4	4 of 4	0.60	Down
Midgut	168 ± 4	4 of 4	0.50	Down
Tubule	139 ± 10	4 of 4	0.40	Down
Hindgut	158 ± 4	4 of 4	0.50	Down
Heart	118 ± 4	4 of 4	0.38	Down
Fat body	152 ± 21	4 of 4	0.49	Down
Ovary	757 ± 8	4 of 4	2.40	Up
Testis	133 ± 6	4 of 4	0.40	Down
Male accessory glands	129 ± 4	4 of 4	0.40	Down
Virgin spermatheca	143 ± 2	4 of 4	0.46	Down
Mated spermatheca	136 ± 6	4 of 4	0.44	Down
Adult carcass	147 ± 3	4 of 4	0.50	Down
Larval CNS	521 ± 33	4 of 4	1.68	Up
Larval Salivary gland	255 ± 16	4 of 4	0.82	None
Larval midgut	157 ± 4	4 of 4	0.51	Down
Larval tubule	254 ± 7	4 of 4	0.80	None
Larval hindgut	209 ± 4	4 of 4	0.67	Down
Larval fat body	185 ± 5	4 of 4	0.60	Down
Larval trachea	264 ± 14	4 of 4	0.85	None
Larval carcass	248 ± 11	4 of 4	0.80	Down
S2 cells (growing)	239 ± 1	4 of 4	0.77	Down
Whole fly	310 ± 20	4 of 4

Looking for CG1677-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720