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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16772-RA through 18771 annotations produced 1 hits



/// /// (CG16772 /// DmauCG16772 /// DsimCG16772):

Annotation Number : CG16772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032835
Gbrowse : chr2L:19962677-19963844 (+) // 100.0 //
Probeset : 1631691_at
Accessions : protein= NP_610015;, nucleotide= NM_136171;
FlyMine data for FBgn0032835.
BDGP gene expression has embryonic in situ data for CG16772: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032835 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 41 of 4 0.10Down
Head581 ± 254 of 4 3.90Up
Eye135 ± 144 of 4 0.92None
Thoracicoabdominal ganglion20 ± 20 of 4 0.10Down
Salivary gland9 ± 40 of 4 0.06Down
Crop572 ± 324 of 4 3.90Up
Midgut7 ± 10 of 4 0.00Down
Tubule62 ± 282 of 4 0.40Down
Hindgut63 ± 04 of 4 0.40Down
Heart155 ± 204 of 4 1.05None
Fat body492 ± 3674 of 4 3.34None
Ovary3 ± 00 of 4 0.00Down
Testis48 ± 74 of 4 0.30Down
Male accessory glands213 ± 174 of 4 1.40Up
Virgin spermatheca565 ± 444 of 4 3.83Up
Mated spermatheca244 ± 704 of 4 1.65None
Adult carcass1020 ± 594 of 4 6.90Up
Larval CNS3 ± 20 of 4 0.02Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut7 ± 20 of 4 0.05Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.03Down
Larval fat body14 ± 30 of 4 0.10Down
Larval trachea6 ± 61 of 4 0.05Down
Larval carcass8 ± 10 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly147 ± 174 of 4

Looking for CG16772-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime