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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG16783-RA through 18771 annotations produced 1 hits


fizzy-related 2 (fzr2):

Annotation Number : CG16783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034937
Gbrowse : chr2R:19838028-19839622 (+) // 100.0 //
Probeset : 1632247_at
Accessions : protein= NP_611854;, nucleotide= NM_138010;
FlyMine data for FBgn0034937.
BDGP gene expression has embryonic in situ data for CG16783: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034937 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034937 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.14Down
Crop3 ± 10 of 4 0.10Down
Midgut10 ± 10 of 4 0.30Down
Tubule6 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.04Down
Fat body3 ± 00 of 4 0.08Down
Ovary1 ± 00 of 4 0.00Down
Testis429 ± 234 of 411.20Up
Male accessory glands8 ± 20 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.09Down
Mated spermatheca6 ± 10 of 4 0.18Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.11Down
Larval Salivary gland7 ± 10 of 4 0.19Down
Larval midgut8 ± 10 of 4 0.23Down
Larval tubule6 ± 20 of 4 0.20Down
Larval hindgut6 ± 10 of 4 0.17Down
Larval fat body43 ± 152 of 4 1.10None
Larval trachea7 ± 31 of 4 0.18Down
Larval carcass4 ± 10 of 4 0.11Down
S2 cells (growing)12 ± 00 of 4 0.33Down
Whole fly38 ± 34 of 4

Looking for CG16783-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime