FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16800-RA through 18771 annotations produced 1 hits

(CG16800):

Annotation Number : CG16800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032462
Gbrowse : chr2L:12966829-12967788 (+) // 100.0 //
Probeset : 1638867_at
Accessions : protein= NP_609594;, nucleotide= NM_135750;
FlyMine data for FBgn0032462.
BioGrid reports that CG16800 interacts with CG5119 .
VDRC has 3 RNAi stocks for FBgn0032462 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	2 of 4	1.20	None
Head	5 ± 1	1 of 4	1.00	None
Eye	6 ± 0	0 of 4	1.07	None
Thoracicoabdominal ganglion	9 ± 1	3 of 4	1.60	None
Salivary gland	16 ± 6	0 of 4	2.91	None
Crop	4 ± 1	0 of 4	0.70	None
Midgut	6 ± 1	0 of 4	1.10	None
Tubule	5 ± 0	0 of 4	0.90	None
Hindgut	4 ± 0	0 of 4	0.80	None
Heart	5 ± 1	0 of 4	0.91	None
Fat body	15 ± 1	4 of 4	2.75	Up
Ovary	2 ± 1	0 of 4	0.50	None
Testis	6 ± 1	2 of 4	1.10	None
Male accessory glands	7 ± 2	1 of 4	1.30	None
Virgin spermatheca	10 ± 1	2 of 4	1.90	Up
Mated spermatheca	7 ± 2	1 of 4	1.37	None
Adult carcass	3 ± 1	0 of 4	0.60	None
Larval CNS	7 ± 0	4 of 4	1.29	None
Larval Salivary gland	6 ± 1	0 of 4	1.10	None
Larval midgut	8 ± 1	1 of 4	1.53	None
Larval tubule	3 ± 1	0 of 4	0.70	None
Larval hindgut	8 ± 1	2 of 4	1.43	None
Larval fat body	5 ± 0	0 of 4	0.90	None
Larval trachea	8 ± 1	1 of 4	1.45	None
Larval carcass	8 ± 0	1 of 4	1.46	None
S2 cells (growing)	9 ± 1	3 of 4	1.62	None
Whole fly	5 ± 1	0 of 4

Looking for CG16800-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720