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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16801-RB through 18771 annotations produced 1 hits



CG16801 (Hr51):

Annotation Number : CG16801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034012
Gbrowse : chr2R:11218279-11226825 (+) // 100.0 //
Probeset : 1641099_a_at
Accessions : protein= NP_611032;, nucleotide= NM_137188;
Pathway : DNA-dependent // inferred from electronic annotation /// 0016319 // mushroom body development // inferred from mutant p
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0034012.
Homophila reports that CG16801 is a close match (7e-11) to human gene NOT;NR4A2;NURR1;TINUR (NP_775265), a gene associated with {Parkinson disease}, 168600 (3).
TRiP has 1 RNAi stocks for FBgn0034012 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034012 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 24 of 4 7.70Up
Head9 13 of 4 1.50None
Eye3 10 of 4 0.60None
Thoracicoabdominal ganglion28 34 of 4 4.30Up
Salivary gland20 31 of 4 3.10Up
Crop5 20 of 4 0.90None
Midgut7 10 of 4 1.10None
Tubule6 00 of 4 0.90None
Hindgut5 11 of 4 0.90None
Heart2 00 of 4 0.37Down
Fat body7 31 of 4 1.19None
Ovary1 00 of 4 0.30Down
Testis38 24 of 4 5.80Up
Male accessory glands9 31 of 4 1.40None
Virgin spermatheca12 21 of 4 1.85None
Mated spermatheca13 53 of 4 2.11None
Adult carcass12 12 of 4 2.00Up
Larval CNS45 64 of 4 6.90Up
Larval Salivary gland6 10 of 4 0.94None
Larval midgut6 20 of 4 0.95None
Larval tubule4 00 of 4 0.60None
Larval hindgut3 00 of 4 0.54Down
Larval fat body13 21 of 4 2.00None
Larval trachea3 30 of 4 0.46None
Larval carcass5 00 of 4 0.78None
S2 cells (growing)34 44 of 4 5.30Up
Whole fly6 03 of 4

Looking for CG16801-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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