Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16807-RA through 18771 annotations produced 1 hits



roquin (roq):

Annotation Number : CG16807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036621
Gbrowse : chr3L:16366152-16371750 (-) // 100.0 //
Probeset : 1638722_at
Accessions : protein= NP_648886;, nucleotide= NM_140629;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0036621.
BDGP gene expression has embryonic in situ data for CG16807: 13 pix of staining in 9 body parts.
BioGrid reports that CG16807 interacts with CG16899 CG4394 .
VDRC has 1 RNAi stocks for FBgn0036621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 54 of 4 0.80None
Head66 84 of 4 0.70Down
Eye50 14 of 4 0.54Down
Thoracicoabdominal ganglion50 64 of 4 0.50Down
Salivary gland165 224 of 4 1.78Up
Crop127 44 of 4 1.40Up
Midgut124 54 of 4 1.30Up
Tubule54 14 of 4 0.60Down
Hindgut105 54 of 4 1.10None
Heart105 64 of 4 1.14None
Fat body115 114 of 4 1.24Up
Ovary158 44 of 4 1.70Up
Testis19 24 of 4 0.20Down
Male accessory glands69 44 of 4 0.80Down
Virgin spermatheca57 24 of 4 0.62Down
Mated spermatheca62 24 of 4 0.67Down
Adult carcass92 44 of 4 1.00None
Larval CNS131 164 of 4 1.41Up
Larval Salivary gland369 384 of 4 3.98Up
Larval midgut92 44 of 4 1.00None
Larval tubule240 34 of 4 2.60Up
Larval hindgut148 64 of 4 1.59Up
Larval fat body164 114 of 4 1.80Up
Larval trachea176 204 of 4 1.90Up
Larval carcass214 114 of 4 2.30Up
S2 cells (growing)197 64 of 4 2.13Up
Whole fly93 44 of 4

Looking for CG16807-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime