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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1681-RA through 18771 annotations produced 1 hits



(CG1681):

Annotation Number : CG1681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030484
Gbrowse : chrX:13298788-13303249 (+) // 100.0 //
Probeset : 1640979_at
Accessions : protein= NP_572886;, nucleotide= NM_132658;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0030484.
BioGrid reports that CG1681 interacts with CG8032 CG30497 CG4767 CG7764 CG8831 .
TRiP has 1 RNAi stocks for FBgn0030484 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 21 of 4 0.10Down
Head316 584 of 4 0.80None
Eye469 134 of 4 1.18None
Thoracicoabdominal ganglion51 24 of 4 0.10Down
Salivary gland733 394 of 4 1.85Up
Crop2573 574 of 4 6.50Up
Midgut3127 994 of 4 7.90Up
Tubule59 74 of 4 0.10Down
Hindgut2542 684 of 4 6.40Up
Heart1362 1394 of 4 3.43Up
Fat body1984 3534 of 4 5.00Up
Ovary72 24 of 4 0.20Down
Testis48 24 of 4 0.10Down
Male accessory glands140 84 of 4 0.40Down
Virgin spermatheca642 524 of 4 1.62Up
Mated spermatheca825 544 of 4 2.08Up
Adult carcass930 1014 of 4 2.30Up
Larval CNS99 154 of 4 0.25Down
Larval Salivary gland46 71 of 4 0.12Down
Larval midgut1095 1504 of 4 2.76Up
Larval tubule50 74 of 4 0.10Down
Larval hindgut764 964 of 4 1.93Up
Larval fat body673 754 of 4 1.70Up
Larval trachea1142 1714 of 4 2.88Up
Larval carcass392 754 of 4 0.99None
S2 cells (growing)621 114 of 4 1.56Up
Whole fly397 464 of 4

Looking for CG1681-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime