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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16817-RA through 18771 annotations produced 1 hits



(CG16817):

Annotation Number : CG16817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037728
Gbrowse : chr3R:5503652-5505383 (+) // 100.0 //
Probeset : 1628784_at
Accessions : protein= NP_649925;, nucleotide= NM_141668;
FlyMine data for FBgn0037728.
BioGrid reports that CG16817 interacts with CG32491 .
TRiP has 1 RNAi stocks for FBgn0037728 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain622 ± 104 of 4 0.40Down
Head774 ± 334 of 4 0.50Down
Eye1694 ± 484 of 4 1.08None
Thoracicoabdominal ganglion705 ± 274 of 4 0.40Down
Salivary gland742 ± 434 of 4 0.47Down
Crop1273 ± 704 of 4 0.80Down
Midgut944 ± 294 of 4 0.60Down
Tubule910 ± 564 of 4 0.60Down
Hindgut799 ± 94 of 4 0.50Down
Heart2817 ± 1334 of 4 1.79Up
Fat body1812 ± 1824 of 4 1.15None
Ovary2043 ± 304 of 4 1.30Up
Testis1333 ± 484 of 4 0.80Down
Male accessory glands1732 ± 634 of 4 1.10None
Virgin spermatheca1766 ± 334 of 4 1.12Up
Mated spermatheca1971 ± 594 of 4 1.25Up
Adult carcass1283 ± 894 of 4 0.80Down
Larval CNS1638 ± 574 of 4 1.04None
Larval Salivary gland1273 ± 564 of 4 0.81Down
Larval midgut900 ± 324 of 4 0.57Down
Larval tubule1609 ± 324 of 4 1.00None
Larval hindgut1217 ± 354 of 4 0.77Down
Larval fat body1264 ± 424 of 4 0.80Down
Larval trachea2439 ± 2074 of 4 1.55Up
Larval carcass1528 ± 494 of 4 0.97None
S2 cells (growing)1426 ± 284 of 4 0.91Down
Whole fly1572 ± 264 of 4

Looking for CG16817-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime