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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1683-RB through 18771 annotations produced 1 hits



Adenine nucleotide translocase 2 (Ant2):

Annotation Number : CG1683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025111
Gbrowse : chrX:10672922-10680913 (-) // 100.0 //
Probeset : 1625005_s_at
Accessions : protein= NP_511110; /// NP_788898;, nucleotide= NM_078555; /// NM_176725;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005471 // ATP:ADP antiporter activity // inf
FlyMine data for FBgn0025111.
Homophila reports that CG1683 is a close match (4e-11) to human gene UCP3 (NP_073714), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
BioGrid reports that CG1683 interacts with CG16884 CG17158 CG18217 CG18476 CG31482 CG4463 .
VDRC has 5 RNAi stocks for FBgn0025111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 24 of 4 0.30Down
Head25 ± 22 of 4 0.20Down
Eye35 ± 14 of 4 0.29Down
Thoracicoabdominal ganglion32 ± 24 of 4 0.30Down
Salivary gland46 ± 54 of 4 0.39Down
Crop25 ± 24 of 4 0.20Down
Midgut65 ± 64 of 4 0.50Down
Tubule35 ± 34 of 4 0.30Down
Hindgut36 ± 24 of 4 0.30Down
Heart16 ± 04 of 4 0.14Down
Fat body29 ± 64 of 4 0.24Down
Ovary14 ± 04 of 4 0.10Down
Testis1145 ± 864 of 4 9.40Up
Male accessory glands30 ± 24 of 4 0.30Down
Virgin spermatheca40 ± 34 of 4 0.33Down
Mated spermatheca44 ± 34 of 4 0.36Down
Adult carcass38 ± 73 of 4 0.30Down
Larval CNS35 ± 24 of 4 0.30Down
Larval Salivary gland25 ± 14 of 4 0.21Down
Larval midgut50 ± 20 of 4 0.41Down
Larval tubule19 ± 12 of 4 0.20Down
Larval hindgut26 ± 14 of 4 0.22Down
Larval fat body136 ± 284 of 4 1.10None
Larval trachea19 ± 74 of 4 0.16Down
Larval carcass37 ± 33 of 4 0.31Down
S2 cells (growing)31 ± 24 of 4 0.26Down
Whole fly121 ± 54 of 4

Looking for CG1683-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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