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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16833-RB through 18771 annotations produced 1 hits



(CG16833):

Annotation Number : CG16833
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:10989304-10995015 (+) // 99.81 //
Probeset : 1631698_s_at
Accessions : protein= NP_001162946; /// NP_001162947; /// NP_652055; /// NP_723642; /// NP_723643;, nucleotide= NM_001169475; /// NM_001169476; /// NM_143798; /// NM_164953; /// NM_164954;
Interpro : 0004835 // tubulin-tyrosine ligase activity // inferred from sequence or structural similarity /// 0004835 // tubulin-ty


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 ± 144 of 417.60Up
Head34 ± 24 of 4 1.90Up
Eye63 ± 34 of 4 3.44Up
Thoracicoabdominal ganglion374 ± 144 of 420.30Up
Salivary gland35 ± 63 of 4 1.94None
Crop30 ± 34 of 4 1.60Up
Midgut18 ± 13 of 4 1.00None
Tubule39 ± 24 of 4 2.10Up
Hindgut18 ± 24 of 4 1.00None
Heart18 ± 24 of 4 0.99None
Fat body56 ± 124 of 4 3.05Up
Ovary32 ± 14 of 4 1.80Up
Testis13 ± 14 of 4 0.70None
Male accessory glands42 ± 44 of 4 2.30Up
Virgin spermatheca52 ± 64 of 4 2.84Up
Mated spermatheca72 ± 174 of 4 3.93None
Adult carcass21 ± 32 of 4 1.20None
Larval CNS268 ± 244 of 414.52Up
Larval Salivary gland36 ± 24 of 4 1.96Up
Larval midgut9 ± 11 of 4 0.54Down
Larval tubule26 ± 24 of 4 1.40None
Larval hindgut22 ± 43 of 4 1.21None
Larval fat body10 ± 31 of 4 0.60None
Larval trachea54 ± 74 of 4 2.93Up
Larval carcass25 ± 34 of 4 1.40None
S2 cells (growing)61 ± 14 of 4 3.30Up
Whole fly18 ± 24 of 4

Looking for CG16833-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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