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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16834-RA through 18771 annotations produced 1 hits



lectin-33A (lectin-33A):

Annotation Number : CG16834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040096
Gbrowse : chr2L:11002314-11002671 (+) // 100.0 //
Probeset : 1637561_at
Accessions : protein= NP_001097145;, nucleotide= NM_001103675;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0040096.
BioGrid reports that CG16834 interacts with CG7191 .
VDRC has 2 RNAi stocks for FBgn0040096 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20None
Head8 ± 21 of 4 0.80None
Eye3 ± 20 of 4 0.33None
Thoracicoabdominal ganglion11 ± 11 of 4 1.20None
Salivary gland51 ± 112 of 4 5.28Up
Crop7 ± 21 of 4 0.70None
Midgut25 ± 21 of 4 2.60Up
Tubule31 ± 83 of 4 3.20Up
Hindgut29 ± 24 of 4 3.10Up
Heart4700 ± 2004 of 4485.80Up
Fat body203 ± 1354 of 421.01None
Ovary1 ± 10 of 4 0.10None
Testis12 ± 14 of 4 1.30None
Male accessory glands8 ± 30 of 4 0.80None
Virgin spermatheca22 ± 34 of 4 2.30Up
Mated spermatheca14 ± 52 of 4 1.45None
Adult carcass255 ± 184 of 426.40Up
Larval CNS2 ± 31 of 4 0.25None
Larval Salivary gland2 ± 00 of 4 0.22None
Larval midgut6 ± 20 of 4 0.71None
Larval tubule21 ± 44 of 4 2.20None
Larval hindgut2 ± 10 of 4 0.26None
Larval fat body7 ± 31 of 4 0.70None
Larval trachea2 ± 10 of 4 0.21None
Larval carcass1 ± 00 of 4 0.19None
S2 cells (growing)3 ± 10 of 4 0.34None
Whole fly9 ± 32 of 4

Looking for CG16834-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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