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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16844-RA through 18771 annotations produced 1 hits



Immune induced molecule 3 (IM3):

Annotation Number : CG16844
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040736
Gbrowse : chr2R:14275624-14276012 (+) // 100.0 //
Probeset : 1622893_at
Accessions : protein= NP_652368;, nucleotide= NM_144111;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040736.
BioGrid reports that CG16844 interacts with CG4276 CG5692 .
VDRC has 2 RNAi stocks for FBgn0040736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 54 of 4 0.10Down
Head4115 ± 2024 of 4 2.90Up
Eye2281 ± 5864 of 4 1.61None
Thoracicoabdominal ganglion114 ± 194 of 4 0.10Down
Salivary gland19 ± 41 of 4 0.01Down
Crop380 ± 404 of 4 0.30Down
Midgut6 ± 10 of 4 0.00Down
Tubule87 ± 343 of 4 0.10Down
Hindgut314 ± 194 of 4 0.20Down
Heart2750 ± 3724 of 4 1.94Up
Fat body4560 ± 4664 of 4 3.22Up
Ovary3 ± 11 of 4 0.00Down
Testis8 ± 22 of 4 0.00Down
Male accessory glands12 ± 20 of 4 0.00Down
Virgin spermatheca4808 ± 1344 of 4 3.39Up
Mated spermatheca3689 ± 3324 of 4 2.60Up
Adult carcass4432 ± 3154 of 4 3.10Up
Larval CNS4 ± 01 of 4 0.00Down
Larval Salivary gland23 ± 161 of 4 0.02Down
Larval midgut26 ± 40 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut26 ± 24 of 4 0.02Down
Larval fat body1097 ± 9564 of 4 0.80None
Larval trachea27 ± 432 of 4 0.02Down
Larval carcass29 ± 104 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1418 ± 834 of 4

Looking for CG16844-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime