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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1685-RA through 18771 annotations produced 1 hits



bobby sox /// penguin (bbx /// pen):

Annotation Number : CG1685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015527
Gbrowse : chrX:21217529-21220866 (-) // 100.0 //
Probeset : 1623956_at
Accessions : protein= NP_523429;, nucleotide= NM_078705;
Pathway : DNA-dependent // inferred from sequence similarity /// 0007475 // apposition of dorsal and ventral imaginal disc-derive
Interpro : 0005634 // nucleus // inferred from curator /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0015527.
BDGP gene expression has embryonic in situ data for pen: 12 pix of staining in 22 body parts.
BioGrid reports that CG1685 interacts with CG17604 .
TRiP has 2 RNAi stocks for FBgn0015527 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 34 of 4 0.50Down
Head73 34 of 4 0.50Down
Eye52 24 of 4 0.34Down
Thoracicoabdominal ganglion94 54 of 4 0.60Down
Salivary gland99 74 of 4 0.64Down
Crop74 24 of 4 0.50Down
Midgut89 54 of 4 0.60Down
Tubule67 114 of 4 0.40Down
Hindgut71 54 of 4 0.50Down
Heart46 44 of 4 0.30Down
Fat body115 244 of 4 0.75Down
Ovary259 54 of 4 1.70Up
Testis24 04 of 4 0.20Down
Male accessory glands132 114 of 4 0.90None
Virgin spermatheca87 34 of 4 0.56Down
Mated spermatheca124 34 of 4 0.81Down
Adult carcass83 54 of 4 0.50Down
Larval CNS182 64 of 4 1.18Up
Larval Salivary gland162 144 of 4 1.05None
Larval midgut66 64 of 4 0.43Down
Larval tubule29 34 of 4 0.20Down
Larval hindgut94 84 of 4 0.61Down
Larval fat body34 63 of 4 0.20Down
Larval trachea169 114 of 4 1.10None
Larval carcass152 344 of 4 0.98None
S2 cells (growing)202 64 of 4 1.31Up
Whole fly154 74 of 4

Looking for CG1685-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime