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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG16853-RA through 18771 annotations produced 1 hits


(CG16853):

Annotation Number : CG16853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028941
Gbrowse : chr2L:13542267-13543560 (+) // 100.0 //
Probeset : 1624870_at
Accessions : protein= NP_609663;, nucleotide= NM_135819;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028941.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 00 of 4 0.09Down
Crop3 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.01Down
Fat body3 ± 40 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis489 ± 244 of 411.80Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 10 of 4 0.05Down
Mated spermatheca0 ± 00 of 4 0.02Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body49 ± 243 of 4 1.20None
Larval trachea3 ± 20 of 4 0.08Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly41 ± 24 of 4

Looking for CG16853-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime