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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16854-RA through 18771 annotations produced 1 hits



(CG16854):

Annotation Number : CG16854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032338
Gbrowse : chr2L:11088330-11090782 (+) // 100.0 //
Probeset : 1641187_at
Accessions : protein= NP_609484;, nucleotide= NM_135640;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0032338.
BioGrid reports that CG16854 interacts with CG17870 .
VDRC has 3 RNAi stocks for FBgn0032338 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 ± 44 of 4 9.70Up
Head30 ± 14 of 4 2.00Up
Eye6 ± 01 of 4 0.39Down
Thoracicoabdominal ganglion205 ± 34 of 413.10Up
Salivary gland8 ± 20 of 4 0.54Down
Crop3 ± 10 of 4 0.20Down
Midgut7 ± 11 of 4 0.50Down
Tubule2 ± 00 of 4 0.20Down
Hindgut5 ± 21 of 4 0.30Down
Heart2 ± 00 of 4 0.18Down
Fat body2 ± 10 of 4 0.16Down
Ovary2 ± 01 of 4 0.20Down
Testis171 ± 64 of 410.90Up
Male accessory glands7 ± 20 of 4 0.50Down
Virgin spermatheca3 ± 10 of 4 0.24Down
Mated spermatheca3 ± 10 of 4 0.24Down
Adult carcass9 ± 00 of 4 0.60Down
Larval CNS38 ± 54 of 4 2.46Up
Larval Salivary gland3 ± 11 of 4 0.25Down
Larval midgut4 ± 20 of 4 0.29Down
Larval tubule2 ± 11 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.20Down
Larval fat body33 ± 113 of 4 2.10None
Larval trachea2 ± 21 of 4 0.16Down
Larval carcass2 ± 10 of 4 0.17Down
S2 cells (growing)1 ± 00 of 4 0.12Down
Whole fly15 ± 14 of 4

Looking for CG16854-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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