FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16858-RA through 18771 annotations produced 1 hits

"type IV collagen ( alpha-chain"):

Annotation Number : CG16858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2L:5012143-5027412 (-) // 100.0 //
Probeset : 1639229_at
Accessions : protein= , nucleotide= NP_477190;
Pathway : 0007443 // Malpighian tubule morphogenesis // inferred from mutant phenotype /// 0007519 // skeletal muscle tissue devel
Interpro : 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // non-traceable author statement ///
FlyMine data for full length.
Homophila reports that CG16858 is a close match (1e-12) to human gene COL11A1;STL2 (NP_542197), a gene associated with Marshall syndrome, 154780 (3);Stickler syndrome, type II, 604841 (3);{Lumbar disc herniation, susceptibility to}, 603932 (3).
BioGrid reports that CG16858 interacts with CG2174 CG4586 CG5053 CG2189 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	567 ± 33	4 of 4	1.70	Up
Head	387 ± 17	4 of 4	1.20	Up
Eye	75 ± 6	4 of 4	0.23	Down
Thoracicoabdominal ganglion	939 ± 50	4 of 4	2.90	Up
Salivary gland	36 ± 6	0 of 4	0.11	Down
Crop	64 ± 7	3 of 4	0.20	Down
Midgut	6 ± 0	0 of 4	0.00	Down
Tubule	21 ± 8	0 of 4	0.10	Down
Hindgut	87 ± 10	4 of 4	0.30	Down
Heart	1508 ± 37	4 of 4	4.59	Up
Fat body	1614 ± 149	4 of 4	4.91	Up
Ovary	213 ± 4	4 of 4	0.60	Down
Testis	43 ± 3	4 of 4	0.10	Down
Male accessory glands	41 ± 4	1 of 4	0.10	Down
Virgin spermatheca	1014 ± 42	4 of 4	3.08	Up
Mated spermatheca	1419 ± 80	4 of 4	4.31	Up
Adult carcass	807 ± 23	4 of 4	2.50	Up
Larval CNS	354 ± 52	4 of 4	1.08	None
Larval Salivary gland	109 ± 11	4 of 4	0.33	Down
Larval midgut	20 ± 3	0 of 4	0.06	Down
Larval tubule	54 ± 11	1 of 4	0.20	Down
Larval hindgut	256 ± 15	4 of 4	0.78	Down
Larval fat body	443 ± 43	4 of 4	1.30	None
Larval trachea	253 ± 12	4 of 4	0.77	Down
Larval carcass	428 ± 35	4 of 4	1.30	None
S2 cells (growing)	3626 ± 46	4 of 4	11.02	Up
Whole fly	329 ± 15	4 of 4

Looking for CG16858-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720